Publications by authors named "Stephan Aiche"

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ProteomicsDB: a multi-omics and multi-organism resource for life science research.
Patroklos Samaras, Tobias Schmidt, Martin Frejno, Siegfried Gessulat, Maria Reinecke, Stephan Aiche

Nucleic Acids Res· January 2020

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Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.
Siegfried Gessulat, Tobias Schmidt, Daniel Paul Zolg, Patroklos Samaras, Karsten Schnatbaum, Stephan Aiche

Nat Methods· June 2019

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Smart Medical Information Technology for Healthcare (SMITH).
Alfred Winter, Sebastian Stäubert, Danny Ammon, Stephan Aiche, Oya Beyan

Methods Inf Med· July 2018

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ProteomicsDB.
Tobias Schmidt, Patroklos Samaras, Martin Frejno, Siegfried Gessulat, Maximilian Barnert, Stephan Aiche

Nucleic Acids Res· January 2018

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The target landscape of clinical kinase drugs.
Susan Klaeger, Stephanie Heinzlmeir, Mathias Wilhelm, Harald Polzer, Binje Vick, Stephan Aiche

Science· December 2017

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Building ProteomeTools based on a complete synthetic human proteome.
Daniel P Zolg, Mathias Wilhelm, Karsten Schnatbaum, Johannes Zerweck, Tobias Knaute, Stephan Aiche

Nat Methods· March 2017

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OpenMS: a flexible open-source software platform for mass spectrometry data analysis.
Hannes L Röst, Timo Sachsenberg, Stephan Aiche, Chris Bielow, Hendrik Weisser, Fabian Aicheler

Nat Methods· August 2016

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From the desktop to the grid: scalable bioinformatics via workflow conversion.
Luis de la Garza, Johannes Veit, Andras Szolek, Marc Röttig, Stephan Aiche

BMC Bioinformatics· March 2016

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Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics.
Anja Wilmes, Chris Bielow, Christina Ranninger, Patricia Bellwon, Lydia Aschauer, Stephan Aiche

Toxicol In Vitro· December 2015

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Evaluation of drug-induced neurotoxicity based on metabolomics, proteomics and electrical activity measurements in complementary CNS in vitro models.
Luise Schultz, Marie-Gabrielle Zurich, Maxime Culot, Anaelle da Costa, Christophe Landry, Stephan Aiche

Toxicol In Vitro· December 2015

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Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.
Stephan Aiche, Timo Sachsenberg, Erhan Kenar, Mathias Walzer, Bernd Wiswedel

Proteomics· April 2015

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qcML: an exchange format for quality control metrics from mass spectrometry experiments.
Mathias Walzer, Lucia Espona Pernas, Sara Nasso, Wout Bittremieux, Sven Nahnsen, Stephan Aiche

Mol Cell Proteomics· August 2014

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Inferring proteolytic processes from mass spectrometry time series data using degradation graphs.
Stephan Aiche, Knut Reinert, Christof Schütte, Diana Hildebrand, Hartmut Schlüter

PLoS One· March 2013

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MSSimulator: Simulation of mass spectrometry data.
Chris Bielow, Stephan Aiche, Sandro Andreotti, Knut Reinert

J Proteome Res· July 2011

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