Publications by authors named "Stephan Fuchs"

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A public health perspective of SARS-CoV-2 evolution and surveillance strategies in Germany from 2020 to 2023.
Djin-Ye Oh, Martin Hölzer, Daniela Börnigen, Sofia Paraskevopoulou, Susanne Duwe, Stephan Fuchs

Commun Med (Lond)· November 2025

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Nosocomial Outbreak of Infections Likely Linked to Saline Solutions in Germany from August 2023 to March 2024-Challenges in Medical Product-Related Outbreaks.
Mirco Sandfort, Anja von Laer, Stefanie Kampmeier, Inga Eichhorn, Silver A Wolf, Stephan Fuchs

Microorganisms· September 2025

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Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2.
Marie Lataretu, Oliver Drechsel, René Kmiecinski, Kathrin Trappe, Martin Hölzer, Stephan Fuchs

F1000Res· July 2025

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Environmental persistence of nontyphoidal Salmonella in an urban informal settlement in Nairobi, Kenya.
Collins K Kebenei, David Onyango, Kelvin Kering, Cecilia Mbae, Susan Kavai, Stephan Fuchs

PLoS One· April 2025

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SARS-CoV-2 evolution on a dynamic immune landscape.
N Alexia Raharinirina, Nils Gubela, Daniela Börnigen, Maureen Rebecca Smith, Djin-Ye Oh, Stephan Fuchs

Nature· March 2025

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[Pain management in geriatric patients-methods paper for the S3 guideline "GeriPAIN"].
Melina Hendlmeier, Thomas Fischer, Corinna Drebenstedt, Stephan Fuchs, Heike Norda

Schmerz· March 2025

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Complementary Ribo-seq approaches map the translatome and provide a small protein census in the foodborne pathogen Campylobacter jejuni.
Kathrin Froschauer, Sarah L Svensson, Rick Gelhausen, Elisabetta Fiore, Philipp Kible, Stephan Fuchs

Nat Commun· March 2025

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End-to-end simulation of nanopore sequencing signals with feed-forward transformers.
Denis Beslic, Martin Kucklick, Susanne Engelmann, Stephan Fuchs, Bernhard Y Renard

Bioinformatics· December 2024

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Shedding of nontyphoidal by asymptomatic convalescing children under 5 years as a risk factor for invasive disease in Mukuru informal settlement in Nairobi, Kenya.
Kelvin Kering, Kariuki Njaanake, Celestine Wairimu, Marianne Mureithi, Collins Kebenei, Stephan Fuchs

J Clin Microbiol· November 2024

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A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.
Johanna Dabernig-Heinz, Mara Lohde, Martin Hölzer, Adriana Cabal, Rick Conzemius, Stephan Fuchs

J Clin Microbiol· September 2024

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CIEVaD: A Lightweight Workflow Collection for the Rapid and On-Demand Deployment of End-to-End Testing for Genomic Variant Detection.
Thomas Krannich, Dimitri Ternovoj, Sofia Paraskevopoulou, Stephan Fuchs

Viruses· September 2024

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General practitioners' perspectives on lifestyle interventions for cognitive preservation in dementia prevention.
Josefine Kappe, Felix Wittmann, Melanie Luppa, Maria Isabel Cardona, Solveign Weise, Stephan Fuchs

BMC Prim Care· August 2024

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Correction for Köndgen et al., "A robust, scalable, and cost-efficient approach to whole genome sequencing of RSV directly from clinical samples".
Sophie Köndgen, Djin-Ye Oh, Andrea Thürmer, Somayyeh Sedaghatjoo, Livia V Patrono, Stephan Fuchs

J Clin Microbiol· July 2024

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A robust, scalable, and cost-efficient approach to whole genome sequencing of RSV directly from clinical samples.
Sophie Köndgen, Djin-Ye Oh, Andrea Thürmer, Somayyeh Sedaghatjoo, Livia V Patrono, Stephan Fuchs

J Clin Microbiol· March 2024

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Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022.
Christian Kohler, Jacqueline King, Lina Stacker, Katja V Goller, Juliane Moritz, Stephan Fuchs

Emerg Microbes Infect· December 2023

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Small proteins in bacteria - Big challenges in prediction and identification.
Stephan Fuchs, Susanne Engelmann

Proteomics· December 2023

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The role of stormwater infrastructure in regional methane emissions.
Lorenzo Rovelli, Carlo Morandi, Attaallah Abusafia, Stephan Fuchs, Ulrich Dittmer

Water Res· September 2023

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MpoxRadar: a worldwide MPXV genomic surveillance dashboard.
Ferdous Nasri, Kunaphas Kongkitimanon, Alice Wittig, Jorge Sánchez Cortés, Annika Brinkmann, Stephan Fuchs

Nucleic Acids Res· July 2023

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CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Alice Wittig, Fábio Miranda, Martin Hölzer, Tom Altenburg, Jakub M Bartoszewicz, Stephan Fuchs

Bioinformatics· September 2022

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Costs and benefits of combined sewer overflow management strategies at the European scale.
Emanuele Quaranta, Stephan Fuchs, Hendrik Jan Liefting, Alma Schellart, Alberto Pistocchi

J Environ Manage· September 2022

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A decade of monitoring micropollutants in urban wet-weather flows: What did we learn?
Lena Mutzner, Viviane Furrer, Hélène Castebrunet, Ulrich Dittmer, Stephan Fuchs

Water Res· September 2022

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genes supporting growth under standard laboratory cultivation conditions and during macrophage infection.
Martin A Fischer, Tim Engelgeh, Patricia Rothe, Stephan Fuchs, Andrea Thürmer

Genome Res· September 2022

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Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021.
Djin Ye Oh, Martin Hölzer, Sofia Paraskevopoulou, Maria Trofimova, Felix Hartkopf, Stephan Fuchs

Clin Infect Dis· August 2022

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SARS-CoV-2 Omicron variants BA.1 and BA.2 both show similarly reduced disease severity of COVID-19 compared to Delta, Germany, 2021 to 2022.
Claudia Sievers, Benedikt Zacher, Alexander Ullrich, Matthew Huska, Stephan Fuchs

Euro Surveill· June 2022

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Prevalence and predictive factors for depressive symptoms among medical students in Germany - a cross-sectional study.
Lilith Pukas, Nadja Rabkow, Lea Keuch, Emilia Ehring, Stephan Fuchs

GMS J Med Educ· April 2022

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