Publications by authors named "Stephan Hamperl"

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Pre-marking chromatin with H3K4 methylation is required for accurate zygotic genome activation and development.
Meghana S Oak, Marco Stock, Ana Janeva, Matthias Mezes, Antony M Hynes-Allen, Stephan Hamperl

Nat Commun· December 2025

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Rad53 regulates RNase H1, which promotes DNA replication through sites of transcription-replication conflict.
Carolin B Wagner, Matteo Longaretti, Sophia G Sergi, Neha Singh, Ioannis Tsirkas, Stephan Hamperl

Cell Rep· November 2025

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The CGG triplet repeat binding protein 1 counteracts R-loop induced transcription-replication stress.
Henning Ummethum, Augusto C Murriello, Marcel Werner, Elizabeth Márquez-Gómez, Ann-Christine König, Stephan Hamperl

EMBO Rep· October 2025

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Differentiation success of reprogrammed cells is heterogeneous in vivo and modulated by somatic cell identity memory.
Tomas Zikmund, Jonathan Fiorentino, Chris Penfold, Marco Stock, Polina Shpudeiko, Stephan Hamperl

Stem Cell Reports· April 2025

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Transcription-replication conflicts drive R-loop-dependent nucleosome eviction and require DOT1L activity for transcription recovery.
Marcel Werner, Manuel Trauner, Tamas Schauer, Henning Ummethum, Elizabeth Márquez-Gómez, Stephan Hamperl

Nucleic Acids Res· February 2025

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A phosphorylation code coordinating transcription condensate dynamics with DNA replication.
Carlos Origel Marmolejo, Celina Sanchez, Juyoung Lee, Marcel Werner, Paige Roberts, Stephan Hamperl

bioRxiv· May 2024

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An automated image analysis pipeline to quantify the coordination and overlap of transcription and replication activity in mammalian genomes.
Maxime Lalonde, Henning Ummethum, Manuel Trauner, Andreas Ettinger, Stephan Hamperl

Methods Cell Biol· February 2024

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A quick restart: RNA polymerase jumping onto post-replicative chromatin.
Marcel Werner, Stephan Hamperl

Mol Cell· January 2024

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Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes.
Clare S K Lee, Matthias Weiβ, Stephan Hamperl

Nucleus· December 2023

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Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency.
Anna Chanou, Matthias Weiβ, Karoline Holler, Atiqa Sajid, Tobias Straub, Stephan Hamperl

Nucleic Acids Res· December 2023

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Single-Copy Gene Locus Chromatin Purification in Saccharomyces cerevisiae.
Atiqa Sajid, Stephan Hamperl

J Vis Exp· November 2023

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A noncanonical enzymatic function of PIWIL4 maintains genomic integrity and leukemic growth in AML.
Shiva Bamezai, Alex Jose Pulikkottil, Tribhuwan Yadav, Naidu M Vegi, Julia Mueller, Stephan Hamperl

Blood· July 2023

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Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control.
Matthias Weiβ, Anna Chanou, Tamas Schauer, Andrey Tvardovskiy, Stefan Meiser, Stephan Hamperl

Cell Rep· February 2023

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Quantitative RNA imaging in single live cells reveals age-dependent asymmetric inheritance.
Igor V Kukhtevich, Mariana Rivero-Romano, Namisha Rakesh, Poonam Bheda, Yagya Chadha, Stephan Hamperl

Cell Rep· November 2022

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Single-Molecule Techniques to Study Chromatin.
Anna Chanou, Stephan Hamperl

Front Cell Dev Biol· July 2021

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Consequences and Resolution of Transcription-Replication Conflicts.
Maxime Lalonde, Manuel Trauner, Marcel Werner, Stephan Hamperl

Life (Basel)· June 2021

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qDRIP: a method to quantitatively assess RNA-DNA hybrid formation genome-wide.
Magdalena P Crossley, Michael J Bocek, Stephan Hamperl, Tomek Swigut, Karlene A Cimprich

Nucleic Acids Res· August 2020

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Proximity Labeling Techniques to Study Chromatin.
Henning Ummethum, Stephan Hamperl

Front Genet· May 2020

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First Days in the Life of Naive Human B Lymphocytes Infected with Epstein-Barr Virus.
Dagmar Pich, Paulina Mrozek-Gorska, Mickaël Bouvet, Atsuko Sugimoto, Ezgi Akidil, Stephan Hamperl

mBio· September 2019

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An intrinsic S/G checkpoint enforced by ATR.
Joshua C Saldivar, Stephan Hamperl, Michael J Bocek, Mingyu Chung, Thomas E Bass

Science· August 2018

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Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich

Cell· August 2017

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Conflict Resolution in the Genome: How Transcription and Replication Make It Work.
Stephan Hamperl, Karlene A Cimprich

Cell· December 2016

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Chromatin structure analysis of single gene molecules by psoralen cross-linking and electron microscopy.
Christopher R Brown, Julian A Eskin, Stephan Hamperl, Joachim Griesenbeck, Melissa S Jurica

Methods Mol Biol· June 2015

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The contribution of co-transcriptional RNA:DNA hybrid structures to DNA damage and genome instability.
Stephan Hamperl, Karlene A Cimprich

DNA Repair (Amst)· July 2014

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Purification of specific chromatin domains from single-copy gene loci in Saccharomyces cerevisiae.
Stephan Hamperl, Christopher R Brown, Jorge Perez-Fernandez, Katharina Huber, Manuel Wittner

Methods Mol Biol· May 2014

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