Publications by authors named "Stephanie Greer"

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Resolving the 22q11.2 deletion using CTLR-Seq reveals chromosomal rearrangement mechanisms and individual variance in breakpoints.
Bo Zhou, Carolin Purmann, Hanmin Guo, GiWon Shin, Yiling Huang, Stephanie U Greer

Proc Natl Acad Sci U S A· July 2024

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The Iterative Mindset Method: a neuroscientific theoretical approach for sustainable behavior change and weight-loss in digital medicine.
Kyra Bobinet, Stephanie M Greer

NPJ Digit Med· September 2023

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Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome.
HoJoon Lee, Stephanie U Greer, Dmitri S Pavlichin, Bo Zhou, Alexander E Urban

Cell Rep Methods· August 2023

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Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.
Stephanie U Greer, Jacquelin Botello, Donna Hongo, Brynn Levy, Premal Shah

J Transl Med· June 2023

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Population bottleneck associated with but likely preceded the recent evolution of self-fertilization in a coastal dune plant.
Stephanie U Greer, Stephen I Wright, Christopher G Eckert

Evolution· February 2023

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Large Cancer Pedigree Involving Multiple Cancer Genes including Likely Digenic and Lynch Syndrome (LS) and an Instance of Recombinational Rescue from LS.
Ingrid P Vogelaar, Stephanie Greer, Fan Wang, GiWon Shin, Billy Lau

Cancers (Basel)· December 2022

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The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Gastric Cancer.
Alison F Almeda, Susan M Grimes, HoJoon Lee, Stephanie Greer, GiWon Shin

Cancer Epidemiol Biomarkers Prev· September 2022

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KmerKeys: a web resource for searching indexed genome assemblies and variants.
Dmitri S Pavlichin, HoJoon Lee, Stephanie U Greer, Susan M Grimes, Tsachy Weissman

Nucleic Acids Res· July 2022

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Germline variants of ATG7 in familial cholangiocarcinoma alter autophagy and p62.
Stephanie U Greer, Jiamin Chen, Margret H Ogmundsdottir, Carlos Ayala, Billy T Lau

Sci Rep· June 2022

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Characterization of the consensus mucosal microbiome of colorectal cancer.
Lan Zhao, Susan M Grimes, Stephanie U Greer, Matthew Kubit, HoJoon Lee

NAR Cancer· December 2021

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Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8.
GiWon Shin, Stephanie U Greer, Erik Hopmans, Susan M Grimes, HoJoon Lee

Genome Med· September 2021

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Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer.
Li C Xia, Paul Van Hummelen, Matthew Kubit, HoJoon Lee, John M Bell, Stephanie U Greer

Sci Rep· March 2020

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Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes.
GiWon Shin, Stephanie U Greer, Li C Xia, HoJoon Lee, Jun Zhou

Nucleic Acids Res· November 2019

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Use of the Chatbot "Vivibot" to Deliver Positive Psychology Skills and Promote Well-Being Among Young People After Cancer Treatment: Randomized Controlled Feasibility Trial.
Stephanie Greer, Danielle Ramo, Yin-Juei Chang, Michael Fu, Judith Moskowitz

JMIR Mhealth Uhealth· October 2019

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Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.
Bo Zhou, Steve S Ho, Stephanie U Greer, Noah Spies, John M Bell

Nucleic Acids Res· May 2019

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Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints.
Noemi Andor, Erin F Simonds, Debra K Czerwinski, Jiamin Chen, Susan M Grimes, Stephanie Greer

Blood· March 2019

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Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.
Bo Zhou, Steve S Ho, Stephanie U Greer, Xiaowei Zhu, John M Bell

Genome Res· March 2019

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Exploring the spatiotemporal genetic heterogeneity in metastatic lung adenocarcinoma using a nuclei flow-sorting approach.
Thomas Lorber, Noemi Andor, Tanja Dietsche, Valeria Perrina, Darius Juskevicius, Stephanie U Greer

J Pathol· February 2019

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Sex, Sleep Deprivation, and the Anxious Brain.
Andrea N Goldstein-Piekarski, Stephanie M Greer, Jared M Saletin, Allison G Harvey, Leanne M Williams

J Cogn Neurosci· April 2018

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Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy.
John M Bell, Billy T Lau, Stephanie U Greer, Christina Wood-Bouwens, Li C Xia

Nucleic Acids Res· November 2017

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Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases.
Stephanie U Greer, Lincoln D Nadauld, Billy T Lau, Jiamin Chen, Christina Wood-Bouwens

Genome Med· June 2017

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The Impact of Sleep Improvement on Food Choices in Adolescents With Late Bedtimes.
Lauren D Asarnow, Stephanie M Greer, Mathew P Walker, Allison G Harvey

J Adolesc Health· May 2017

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A Genetic Polymorphism of the Human Dopamine Transporter Determines the Impact of Sleep Deprivation on Brain Responses to Rewards and Punishments.
Stephanie M Greer, Andrea N Goldstein, Brian Knutson, Matthew P Walker

J Cogn Neurosci· June 2016

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Human Hippocampal Structure: A Novel Biomarker Predicting Mnemonic Vulnerability to, and Recovery from, Sleep Deprivation.
Jared M Saletin, Andrea N Goldstein-Piekarski, Stephanie M Greer, Shauna Stark, Craig E Stark

J Neurosci· February 2016

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