Publications by authors named "Stephen Alafi"

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Genomic Epidemiology of Multidrug-Resistant Escherichia coli and Klebsiella pneumoniae in Kenya, Uganda, and Jordan.
Denis K Byarugaba, Tamer S Osman, Omar M Sayyouh, Godfrey Wokorach, Collins K Kigen, Stephen Alafi

Emerg Infect Dis· October 2024

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Draft genome sequence of strain MUWRP1017 isolated from the pus of a female inpatient at Bwera General Hospital in Uganda.
Godfrey Wokorach, Bernard Erima, Stephen Alafi, Hope O Kabatesi, Julius T Muhindo

Microbiol Resour Announc· September 2024

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Resistome and virulome of high-risk pandemic clones of multidrug-resistant extra-intestinal pathogenic Escherichia coli (ExPEC) isolated from tertiary healthcare settings in Uganda.
Denis K Byarugaba, Bernard Erima, Godfrey Wokorach, Stephen Alafi, Hannah Kibuuka

PLoS One· November 2023

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Genome Analysis of Reveals International High-Risk Pandemic MDR Clones Emerging in Tertiary Healthcare Settings in Uganda.
Denis K Byarugaba, Bernard Erima, Godfrey Wokorach, Stephen Alafi, Hannah Kibuuka

Pathogens· November 2023

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Whole Genome Sequencing Reveals High Genetic Diversity, Diverse Repertoire of Virulence-Associated Genes and Limited Antibiotic Resistance Genes among Commensal from Food Animals in Uganda.
Denis K Byarugaba, Godfrey Wokorach, Stephen Alafi, Bernard Erima, Florence Najjuka

Microorganisms· July 2023

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Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda.
Yaovi Mahuton Gildas Hounmanou, Agnes Wanyana, Stephen Alafi, Fred Wabwire-Mangen, Henrik Christensen

Sci Rep· June 2023

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Genome Sequences of Bacteriophages UPEC01, UPEC03, UPEC06, and UPEC07 Infecting Avian Pathogenic Escherichia coli.
George Kazibwe, Christian Ndekezi, Ruth Alinaitwe, Stephen Alafi, Ann Nanteza

Microbiol Resour Announc· March 2022

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Bacteriophage activity against and characterisation of avian pathogenic Escherichia coli isolated from colibacillosis cases in Uganda.
George Kazibwe, Phionah Katami, Ruth Alinaitwe, Stephen Alafi, Ann Nanteza

PLoS One· January 2021

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