Publications by authors named "Stephen D Fried"

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Cryo-EM structures of plant Augmin reveal coiled-coil assembly, antiparallel dimerization, and NEDD1 binding.
Md Ashaduzzaman, Aryan Taheri, Yuh-Ru Julie Lee, Yuqi Tang, Shubham Mittal, Stephen D Fried

Nat Commun· December 2025

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Prebiotically Plausible Peptides can Self-assemble into β-rich Nanostructures.
Mikhail Makarov, Robin Kryštůfek, Matúš Friček, Edgar Manriquez-Sandoval, Soumya Dutta, Stephen D Fried

bioRxiv· November 2025

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Protein surface chemistry encodes an adaptive tolerance to desiccation.
Paulette Sofía Romero-Pérez, Haley M Moran, David P Cordone, Azeem Horani, Alexander Truong, Stephen D Fried

Cell Syst· October 2025

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Chaperone dependency during biogenesis does not correlate with chaperone dependency during refolding.
Divya Yadav, İdil I Demiralp, Mark Fakler, Stephen D Fried

Mol Syst Biol· October 2025

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Investigation of the global translational response to oxidative stress in the model archaeon reveals untranslated small RNAs with ribosome occupancy.
Emma Dallon, Haley M Moran, Sadhana R Chidambaran, Arman Kian, Betty Y H Huang, Stephen D Fried

mSphere· September 2025

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A Roadmap for Improving Reliability and Data Sharing in Crosslinking Mass Spectrometry.
Juri Rappsilber, James Bruce, Colin Combe, Stephen D Fried, Andrea Graziadei

Mol Cell Proteomics· August 2025

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An intrinsically disordered region of Ubp10 regulates its binding and activity on ubiquitinated histone substrates.
Anneliese M Faustino, Melesse Nune, Raquel Merino-Urteaga, Edgar Manriquez-Sandoval, Matthew Poyton, Stephen D Fried

Protein Sci· August 2025

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Non-native entanglement protein misfolding observed in all-atom simulations and supported by experimental structural ensembles.
Quyen V Vu, Ian Sitarik, Yang Jiang, Yingzi Xia, Piyoosh Sharma, Stephen D Fried

Sci Adv· August 2025

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Transient Poly(ADP-Ribose) Triggers FUS Condensation Hysteresis via a Prion-Like Mechanism.
Hongrui Liu, Yuxuan Cai, Leilei Shi, Meenakshi Pillai, Nilimesh Das, Stephen D Fried

bioRxiv· July 2025

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Proteins with cognition-associated structural changes in a rat model of aging exhibit reduced refolding capacity.
Haley E Tarbox, Audrey Branch, Stephen D Fried

Sci Adv· July 2025

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Investigation of the global translational response to oxidative stress in the model archaeon reveals untranslated small RNAs with ribosome occupancy.
Emma Dallon, Haley M Moran, Sadhana R Chidambaran, Arman Kian, Betty Y H Huang, Stephen D Fried

bioRxiv· July 2025

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Chaperone Dependency during Primary Protein Biogenesis Does Not Correlate with Chaperone Dependency during Refolding.
Divya Yadav, İdil I Demiralp, Mark Fakler, Stephen D Fried

bioRxiv· June 2025

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Phase separation of PGL-3 driven by structured domains that oligomerize and interact with terminal RGG motifs.
Rimpei Kuroiwa, Piyoosh Sharma, Andrea Putnam, Stephen D Fried, Geraldine Seydoux

bioRxiv· June 2025

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Phosphoglycerate Kinase Can Adopt a Topologically Misfolded Form that is More Stable than its Native State.
Yingzi Xia, Barbara Amann, Richard E Gillilan, Piyoosh Sharma, Sreemantee Sen, Stephen D Fried

bioRxiv· June 2025

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Protein misfolding involving entanglements providesa structural explanation for the origin of stretched-exponential refolding kinetics.
Yang Jiang, Yingzi Xia, Ian Sitarik, Piyoosh Sharma, Hyebin Song, Stephen D Fried

Sci Adv· March 2025

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Cryo-EM structures of the Plant Augmin reveal its intertwined coiled-coil assembly, antiparallel dimerization and NEDD1 binding mechanisms.
Md Ashaduzzaman, Aryan Taheri, Yuh-Ru Julie Lee, Yuqi Tang, Fei Guo, Stephen D Fried

bioRxiv· February 2025

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Protein surface chemistry encodes an adaptive tolerance to desiccation.
Paulette Sofía Romero-Pérez, Haley M Moran, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval, Stephen D Fried

bioRxiv· October 2024

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Cognition-Associated Protein Structural Changes in a Rat Model of Aging are Related to Reduced Refolding Capacity.
Haley E Tarbox, Audrey Branch, Stephen D Fried

bioRxiv· September 2024

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Proteome-Wide Assessment of Protein Structural Perturbations Under High Pressure.
Haley M Moran, Edgar Manriquez-Sandoval, Piyoosh Sharma, Stephen D Fried, Richard E Gillilan

PRX Life· September 2024

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FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe.
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried

J Proteome Res· July 2024

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Synonymous Mutations Can Alter Protein Dimerization Through Localized Interface Misfolding Involving Self-entanglements.
Pham Dang Lan, Daniel Allen Nissley, Ian Sitarik, Quyen V Vu, Yang Jiang, Stephen D Fried

J Mol Biol· March 2024

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Lowering Activation Barriers to Success in Physical Chemistry (LABSIP): A Community Project.
Carlos R Baiz, Robert F Berger, Kelling J Donald, Julio C de Paula, Stephen D Fried

J Phys Chem A· January 2024

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FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe.
Edgar Manriquez-Sandoval, Joy Brewer, Gabriela Lule, Samanta Lopez, Stephen D Fried

bioRxiv· December 2023

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Secretion-Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface.
Qi Xie, Sea On Lee, Nitya Vissamsetti, Sikao Guo, Margaret E Johnson, Stephen D Fried

Angew Chem Int Ed Engl· September 2023

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Progress toward Proteome-Wide Photo-Cross-Linking to Enable Residue-Level Visualization of Protein Structures and Networks In Vivo.
Anneliese M Faustino, Piyoosh Sharma, Edgar Manriquez-Sandoval, Divya Yadav, Stephen D Fried

Anal Chem· July 2023

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