Publications by authors named "Stephen D Larson"

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Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.
Padraig Gleeson, Matteo Cantarelli, Boris Marin, Adrian Quintana, Matt Earnshaw, Stephen D Larson

Neuron· August 2019

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Connectome to behaviour: modelling at cellular resolution.
Stephen D Larson, Padraig Gleeson, André E X Brown

Philos Trans R Soc Lond B Biol Sci· September 2018

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Three-dimensional simulation of the body and muscle cells in liquid and gel environments for behavioural analysis.
Andrey Palyanov, Sergey Khayrulin, Stephen D Larson

Philos Trans R Soc Lond B Biol Sci· September 2018

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c302: a multiscale framework for modelling the nervous system of .
Padraig Gleeson, David Lung, Radu Grosu, Ramin Hasani, Stephen D Larson

Philos Trans R Soc Lond B Biol Sci· September 2018

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OpenWorm: overview and recent advances in integrative biological simulation of .
Gopal P Sarma, Chee Wai Lee, Tom Portegys, Vahid Ghayoomie, Travis Jacobs, Stephen D Larson

Philos Trans R Soc Lond B Biol Sci· September 2018

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Unit testing, model validation, and biological simulation.
Gopal P Sarma, Travis W Jacobs, Mark D Watts, S Vahid Ghayoomie, Stephen D Larson

F1000Res· September 2016

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NeuroLex.org: an online framework for neuroscience knowledge.
Stephen D Larson, Maryann E Martone

Front Neuroinform· September 2013

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A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.
Jonathan Cachat, Anita Bandrowski, Jeffery S Grethe, Amarnath Gupta, Vadim Astakhov, Stephen D Larson

Int Rev Neurobiol· May 2013

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Towards a virtual C. elegans: a framework for simulation and visualization of the neuromuscular system in a 3D physical environment.
Andrey Palyanov, Sergey Khayrulin, Stephen D Larson, Alexander Dibert

In Silico Biol· January 2013

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Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.
Fahim T Imam, Stephen D Larson, Anita Bandrowski, Jeffery S Grethe, Amarnath Gupta

Front Genet· October 2012

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A formal ontology of subcellular neuroanatomy.
Stephen D Larson, Lisa L Fong, Amarnath Gupta, Christopher Condit, William J Bug

Front Neuroinform· July 2011

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Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons.
Sulagna Ghosh, Stephen D Larson, Hooman Hefzi, Zachary Marnoy, Tyler Cutforth

Nature· April 2011

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Digital atlasing and standardization in the mouse brain.
Michael Hawrylycz, Richard A Baldock, Albert Burger, Tsutomu Hashikawa, G Allan Johnson, Stephen D Larson

PLoS Comput Biol· February 2011

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Ontologies for Neuroscience: What are they and What are they Good for?
Stephen D Larson, Maryann E Martone

Front Neurosci· May 2009

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The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.
William J Bug, Giorgio A Ascoli, Jeffrey S Grethe, Amarnath Gupta, Christine Fennema-Notestine, Stephen D Larson

Neuroinformatics· September 2008

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