Publications by authors named "Stephen P Moose"

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Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum.
Jie Fu, Brandon James, Madara Hetti-Arachchilage, Yingjie Lei, Brian McKinley, Stephen P Moose

BMC Plant Biol· October 2025

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Synthetic feed-forward loop circuit boosts transgene expression in sugarcane.
Zhihai Zhang, Sultana Anwar, Erin J Yafuso, Evelyn Tatiana Zuniga Soto, Changwei Li, Stephen P Moose

Plant Cell Rep· July 2025

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Breaking the field phenotyping bottleneck in maize with autonomous robots.
Jason DeBruin, Thomas Aref, Sara Tirado Tolosa, Rebecca Hensley, Haley Underwood, Stephen Patrick Moose

Commun Biol· March 2025

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Efficient mutagenesis and genotyping of maize inbreds using biolistics, multiplex CRISPR/Cas9 editing, and Indel-Selective PCR.
Maruti Nandan Rai, Brian Rhodes, Stephen Jinga, Praveena Kanchupati, Edward Ross, Stephen P Moose

Plant Methods· March 2025

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Development of vegetative oil sorghum: From lab-to-field.
Kiyoul Park, Truyen Quach, Teresa J Clark, Hyojin Kim, Tieling Zhang, Stephen P Moose

Plant Biotechnol J· February 2025

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Major impacts of widespread structural variation on sorghum.
Zhihai Zhang, Joao Paulo Gomes Viana, Bosen Zhang, Kimberly K O Walden, Hans Müller Paul, Stephen P Moose

Genome Res· March 2024

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Topological data analysis expands the genotype to phenotype map for 3D maize root system architecture.
Mao Li, Zhengbin Liu, Ni Jiang, Benjamin Laws, Christine Tiskevich, Stephen P Moose

Front Plant Sci· January 2024

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Transformation and gene editing in the bioenergy grass Miscanthus.
Anthony Trieu, Mohammad B Belaffif, Pradeepa Hirannaiah, Shilpa Manjunatha, Rebekah Wood, Stephen P Moose

Biotechnol Biofuels Bioprod· December 2022

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Small RNAs mediate transgenerational inheritance of genome-wide trans-acting epialleles in maize.
Shuai Cao, Longfei Wang, Tongwen Han, Wenxue Ye, Yang Liu, Stephen P Moose

Genome Biol· February 2022

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Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships.
Chia-Yi Cheng, Ying Li, Kranthi Varala, Jessica Bubert, Ji Huang, Stephen P Moose

Nat Commun· September 2021

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Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project.
Diego Jarquin, Natalia de Leon, Cinta Romay, Martin Bohn, Edward S Buckler, Stephen P Moose

Front Genet· March 2021

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The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment.
Anna R Rogers, Jeffrey C Dunne, Cinta Romay, Martin Bohn, Edward S Buckler, Stephen P Moose

G3 (Bethesda)· February 2021

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Genome biology of the paleotetraploid perennial biomass crop Miscanthus.
Therese Mitros, Adam M Session, Brandon T James, Guohong Albert Wu, Mohammad B Belaffif, Stephen P Moose

Nat Commun· October 2020

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Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.
Bridget A McFarland, Naser AlKhalifah, Martin Bohn, Jessica Bubert, Edward S Buckler, Stephen P Moose

BMC Res Notes· February 2020

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Identification and characterization of a novel stay-green QTL that increases yield in maize.
Jun Zhang, Kevin A Fengler, John L Van Hemert, Rajeev Gupta, Nick Mongar, Stephen P Moose

Plant Biotechnol J· December 2019

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Transcriptome Profiling and Genome-Wide Association Studies Reveal and Other Defense Genes Involved in Multiple Signaling Pathways Induced by Herbicide Safener in Grain Sorghum.
You Soon Baek, Loren V Goodrich, Patrick J Brown, Brandon T James, Stephen P Moose

Front Plant Sci· March 2019

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Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.
Naser AlKhalifah, Darwin A Campbell, Celeste M Falcon, Jack M Gardiner, Nathan D Miller, Stephen P Moose

BMC Res Notes· July 2018

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Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants.
Qing Li, Ying Li, Stephen P Moose, Matthew E Hudson

BMC Plant Biol· July 2015

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Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C4 photosynthesis in Miscanthus × giganteus.
Ashley K Spence, Jay Boddu, Dafu Wang, Brandon James, Kankshita Swaminathan, Stephen P Moose

J Exp Bot· July 2014

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A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes.
Adam Barling, Kankshita Swaminathan, Therese Mitros, Brandon T James, Juliette Morris, Stephen P Moose

BMC Genomics· December 2013

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The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements.
Ying Li, Kranthi Varala, Stephen P Moose, Matthew E Hudson

PLoS One· May 2013

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Repeat associated small RNAs vary among parents and following hybridization in maize.
Wesley T Barber, Wei Zhang, Hlaing Win, Kranthi K Varala, Jane E Dorweiler, Stephen P Moose

Proc Natl Acad Sci U S A· June 2012

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A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy.
Kankshita Swaminathan, Won Byoung Chae, Therese Mitros, Kranthi Varala, Liang Xie, Stephen P Moose

BMC Genomics· April 2012

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Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.
Kankshita Swaminathan, Magdy S Alabady, Kranthi Varala, Emanuele De Paoli, Isaac Ho, Stephen P Moose

Genome Biol· August 2010

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Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes.
Jianping Wang, Bruce Roe, Simone Macmil, Qingyi Yu, Jan E Murray, Stephen P Moose

BMC Genomics· April 2010

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