Publications by authors named "Stephenie D Prokopec"

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Elucidating divergent biology in uterine carcinosarcoma.
Vikas Garg, Stephenie D Prokopec, Simone C Stone, Sara Pakbaz, Min Li Chen

Transl Oncol· November 2025

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The Germline and Somatic Origins of Prostate Cancer Heterogeneity.
Takafumi N Yamaguchi, Kathleen E Houlahan, Helen Zhu, Natalie Kurganovs, Julie Livingstone, Stephenie D Prokopec

Cancer Discov· May 2025

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The genomic and evolutionary landscapes of anaplastic thyroid carcinoma.
Peter Y F Zeng, Stephenie D Prokopec, Stephen Y Lai, Nicole Pinto, Michelle A Chan-Seng-Yue

Cell Rep· March 2024

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Early Cancer Detection in Li-Fraumeni Syndrome with Cell-Free DNA.
Derek Wong, Ping Luo, Leslie E Oldfield, Haifan Gong, Ledia Brunga, Stephenie D Prokopec

Cancer Discov· January 2024

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Loss of LRP1B expression drives acquired chemo and radio-resistance in HPV-positive head and neck cancer.
Mushfiq H Shaikh, Alice Dawson, Stephenie D Prokopec, John W Barrett, Peter Y F Zeng

Oral Oncol· November 2023

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Identifying Mechanisms of Resistance by Circulating Tumor DNA in EVOLVE, a Phase II Trial of Cediranib Plus Olaparib for Ovarian Cancer at Time of PARP Inhibitor Progression.
Stephanie Lheureux, Stephenie D Prokopec, Leslie E Oldfield, Eduardo Gonzalez-Ochoa, Jeffrey P Bruce

Clin Cancer Res· September 2023

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Serological abnormalities that predict progression to systemic autoimmune rheumatic diseases in antinuclear antibody-positive individuals.
Carolina Muñoz-Grajales, Stephenie D Prokopec, Sindhu R Johnson, Zahi Touma, Zareen Ahmad

Rheumatology (Oxford)· March 2022

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Flavopiridol causes cell cycle inhibition and demonstrates anti-cancer activity in anaplastic thyroid cancer models.
Nicole Pinto, Stephenie D Prokopec, Farhad Ghasemi, Jalna Meens, Kara M Ruicci

PLoS One· November 2020

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Sex differences in oncogenic mutational processes.
Constance H Li, Stephenie D Prokopec, Ren X Sun, Fouad Yousif, Nathaniel Schmitz

Nat Commun· August 2020

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Sex disparities in head & neck cancer driver genes: An analysis of the TCGA dataset.
Neil Mundi, Farhad Ghasemi, Peter Y F Zeng, Stephenie D Prokopec, Krupal Patel

Oral Oncol· May 2020

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Transgenerational epigenetic and transcriptomic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin exposure in rat.
Stephenie D Prokopec, Matti Viluksela, Hanna M Miettinen, Paul C Boutros, Raimo Pohjanvirta

Arch Toxicol· May 2020

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2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver.
Ana B Villaseñor-Altamirano, John D Watson, Stephenie D Prokopec, Cindy Q Yao, Paul C Boutros

PLoS One· March 2020

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Genomic and human papillomavirus profiling of an oral cancer cohort identifies TP53 as a predictor of overall survival.
Neil Mundi, Stephenie D Prokopec, Farhad Ghasemi, Andrew Warner, Krupal Patel

Cancers Head Neck· December 2019

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Comparative toxicoproteogenomics of mouse and rat liver identifies TCDD-resistance genes.
Stephenie D Prokopec, Aileen Lu, Sandy Che-Eun S Lee, Cindy Q Yao, Ren X Sun

Arch Toxicol· October 2019

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Rethinking Lupus Nephritis Classification on a Molecular Level.
Salem Almaani, Stephenie D Prokopec, Jianying Zhang, Lianbo Yu, Carmen Avila-Casado

J Clin Med· September 2019

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Lestaurtinib is a potent inhibitor of anaplastic thyroid cancer cell line models.
Nicole Pinto, Stephenie D Prokopec, Frederick Vizeacoumar, Karlee Searle, Matthew Lowerison

PLoS One· April 2019

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A readout of metabolic efficiency in arylamine N-acetyltransferase-deficient mice reveals minor energy metabolism changes.
Raphaël G P Denis, Florent Busi, Julien Castel, Chloé Morel, Wenchao Zhang, Stephenie D Prokopec

FEBS Lett· April 2019

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Transcriptomic Impact of IMA-08401, a Novel AHR Agonist Resembling Laquinimod, on Rat Liver.
Stephenie D Prokopec, Raimo Pohjanvirta, Selma Mahiout, Lars Pettersson, Paul C Boutros

Int J Mol Sci· March 2019

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Mutational analysis of head and neck squamous cell carcinoma stratified by smoking status.
Farhad Ghasemi, Stephenie D Prokopec, Danielle MacNeil, Neil Mundi, Steven F Gameiro

JCI Insight· January 2019

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BPG: Seamless, automated and interactive visualization of scientific data.
Christine P'ng, Jeffrey Green, Lauren C Chong, Daryl Waggott, Stephenie D Prokopec

BMC Bioinformatics· January 2019

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Identification of a neutrophil-related gene expression signature that is enriched in adult systemic lupus erythematosus patients with active nephritis: Clinical/pathologic associations and etiologic mechanisms.
Joan E Wither, Stephenie D Prokopec, Babak Noamani, Nan-Hua Chang, Dennisse Bonilla

PLoS One· August 2018

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Genomic hallmarks of localized, non-indolent prostate cancer.
Michael Fraser, Veronica Y Sabelnykova, Takafumi N Yamaguchi, Lawrence E Heisler, Julie Livingstone, Stephenie D Prokopec

Nature· January 2017

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Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems.
Stephenie D Prokopec, Kathleen E Houlahan, Ren X Sun, John D Watson, Cindy Q Yao

BMC Genomics· January 2017

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VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams.
Felix Lam, Christopher M Lalansingh, Holly E Babaran, Zhiyuan Wang, Stephenie D Prokopec

BMC Bioinformatics· October 2016

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A discrete cluster of urinary biomarkers discriminates between active systemic lupus erythematosus patients with and without glomerulonephritis.
Carolina Landolt-Marticorena, Stephenie D Prokopec, Stacey Morrison, Babak Noamani, Dennisse Bonilla

Arthritis Res Ther· October 2016

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