Publications by authors named "Stuart Jefferys"

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Activating NRF2 mutation alters the differentiation of human non-small cell lung cancer.
Samera H Hamad, Hansa Joshi, T Hess, Stuart R Jefferys, Zena Saleh

Cancer Gene Ther· December 2025

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Activating NRF2E79Q mutation alters the differentiation of human non-small cell lung cancer.
Samera Hamad, Hansa Joshi, T Hess, Stuart Jefferys, Zena Saleh

Res Sq· May 2025

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Spon1+ inflammatory monocytes promote collagen remodeling and lung cancer metastasis through lipoprotein receptor 8 signaling.
Kristina M Whately, Nisitha Sengottuvel, Lincy Edatt, Sonal Srivastava, Allison T Woods, Stuart R Jefferys

JCI Insight· May 2024

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Comprehensive Viral Genotyping Reveals Prognostic Viral Phylogenetic Groups in HPV16-Associated Squamous Cell Carcinoma of the Oropharynx.
Travis P Schrank, Lee Landess, Wesley H Stepp, Hina Rehmani, William H Weir, Stuart R Jefferys

Mol Cancer Res· October 2022

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FOXA1 and adaptive response determinants to HER2 targeted therapy in TBCRC 036.
Steven P Angus, Timothy J Stuhlmiller, Gaurav Mehta, Samantha M Bevill, Daniel R Goulet, Stuart Jefferys

NPJ Breast Cancer· May 2021

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Epigenomic characterization of latent HIV infection identifies latency regulating transcription factors.
Stuart R Jefferys, Samuel D Burgos, Jackson J Peterson, Sara R Selitsky, Anne-Marie W Turner

PLoS Pathog· February 2021

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Rapid Clearance Profile of Plasma Circulating Tumor HPV Type 16 DNA during Chemoradiotherapy Correlates with Disease Control in HPV-Associated Oropharyngeal Cancer.
Bhishamjit S Chera, Sunil Kumar, Brian T Beaty, David Marron, Stuart Jefferys

Clin Cancer Res· August 2019

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The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma.
Xiaobei Zhao, Paul Little, Alan P Hoyle, Guillaume J Pegna, Michele C Hayward, Stuart R Jefferys

Front Oncol· January 2019

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Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma.
Lauren Fishbein, Ignaty Leshchiner, Vonn Walter, Ludmila Danilova, A Gordon Robertson, Stuart R Jefferys

Cancer Cell· February 2017

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Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

N Engl J Med· January 2016

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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

N Engl J Med· June 2015

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Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data.
Stuart R Jefferys, Morgan C Giddings

Bioinformatics· March 2011

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Automated data integration and determination of posttranslational modifications with the protein inference engine.
Stuart R Jefferys, Morgan C Giddings

Methods Mol Biol· February 2011

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