Publications by authors named "Stuart Moodie"

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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Stuart L Moodie

Mol Syst Biol· August 2020

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Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
Lucian P Smith, Stuart L Moodie, Frank T Bergmann, Colin Gillespie, Sarah M Keating

J Integr Bioinform· July 2020

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Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
Adrien Rougny, Vasundra Touré, Stuart Moodie, Irina Balaur, Tobias Czauderna

J Integr Bioinform· June 2019

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Complex Bayesian Modeling Workflows Encoding and Execution Made Easy With a Novel WinBUGS Plugin of the Drug Disease Model Resources Interoperability Framework.
Cristiana Larizza, Elisa Borella, Lorenzo Pasotti, Palma Tartaglione, Mike Smith, Stuart Moodie

CPT Pharmacometrics Syst Pharmacol· May 2018

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Model Description Language (MDL): A Standard for Modeling and Simulation.
Mike K Smith, Stuart L Moodie, Roberto Bizzotto, Eric Blaudez, Elisa Borella

CPT Pharmacometrics Syst Pharmacol· October 2017

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Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
Stuart Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger

J Integr Bioinform· September 2015

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Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
Anatoly Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Stuart Moodie

J Integr Bioinform· September 2015

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Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
Huaiyu Mi, Falk Schreiber, Stuart Moodie, Tobias Czauderna, Emek Demir

J Integr Bioinform· September 2015

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COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
Frank T Bergmann, Richard Adams, Stuart Moodie, Jonathan Cooper, Mihai Glont

BMC Bioinformatics· December 2014

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Software support for SBGN maps: SBGN-ML and LibSBGN.
Martijn P van Iersel, Alice C Villéger, Tobias Czauderna, Sarah E Boyd, Frank T Bergmann, Stuart L Moodie

Bioinformatics· August 2012

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Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE).
Nicolas Le Novère, Michael Hucka, Nadia Anwar, Gary D Bader, Emek Demir, Stuart Moodie

Stand Genomic Sci· November 2011

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Systems biology reveals new strategies for personalizing cancer medicine and confirms the role of PTEN in resistance to trastuzumab.
Dana Faratian, Alexey Goltsov, Galina Lebedeva, Anatoly Sorokin, Stuart Moodie

Cancer Res· August 2009

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The Systems Biology Graphical Notation.
Nicolas Le Novère, Michael Hucka, Huaiyu Mi, Stuart Moodie, Falk Schreiber

Nat Biotechnol· August 2009

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Dynamic computational modeling in the search for better breast cancer drug therapy.
Dana Faratian, Stuart L Moodie, David J Harrison, Igor Goryanin

Pharmacogenomics· December 2007

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GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults.
Graeme R Grimes, Stuart Moodie, John S Beattie, Marie Craigon, Paul Dickinson

BMC Genomics· December 2005

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Application of high-throughput computing in bioinformatics.
Mark Swindells, Mark Rae, Martyn Pearce, Stuart Moodie, Rob Miller

Philos Trans A Math Phys Eng Sci· June 2002

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