Publications by authors named "Subhadip Basu"

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Scale-adjusted distance transform and its applications to segmentation of multimodal images.
Nirmal Das, Subhadip Basu, Punam K Saha

Methods· January 2026

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2dSpAn-Auto: an automated tool for analysis of two-dimensional dendritic spine images.
Shauvik Paul, Rahul Pramanick, Nirmal Das, Ewa Baczynska, Zeinab Bedrood, Subhadip Basu

BMC Bioinformatics· July 2025

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DensePPI-2: a bio-inspired update for sequence-based PPI prediction leveraging mutation rates.
Tapas Chakraborty, Debarati Paul, Aanzil Akram Halsana, Anup Kumar Halder, Subhadip Basu

Brief Bioinform· July 2025

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Self-Assembly of Mycolic Acid in Water: Monolayer or Bilayer.
Yogendra Kumar, Subhadip Basu, Dipankar Chatterji, Anirban Ghosh, Narayanaswamy Jayaraman

Langmuir· February 2025

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PCPredG: Protein Complex Prediction Using Graphlet Features.
Rupali Patua, Anup Kumar Halder, Soma Dasgupta, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu

IEEE Trans Comput Biol Bioinform· January 2025

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Mixing small proteins with lipids and cholesterol.
Subhadip Basu, Oded Farago

J Chem Phys· December 2024

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Computational drug repurposing for viral infectious diseases: a case study on monkeypox.
Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu, Tapabrata Chakraborti

Brief Funct Genomics· September 2024

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MSO-GP: 3-D segmentation of large and complex conjoined tree structures.
Arijit De, Nirmal Das, Punam K Saha, Alejandro Comellas, Eric Hoffman, Subhadip Basu

Methods· September 2024

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Editorial for BFG special issue: Computational genomics for precision medicine and personalized healthcare.
Tapabrata Chakraborti, Subhadip Basu

Brief Funct Genomics· September 2024

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Editorial for methods special issue: Big data in digital health: methods, analysis and prospects.
Tapabrata Chakraborti, Subhadip Basu

Methods· September 2024

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Reversing the Trend: Deciphering Self-Assembly of Unconventional Amphiphiles Having Both Alkyl-Chain and PEG.
Rita Ghosh, Bharat Singh, Subhadip Basu, Avijit Mondal, Prabal Kumar Maiti

Chempluschem· August 2024

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Permeability of TB drugs through the mycolic acid monolayer: a tale of two force fields.
Subhadip Basu, Sandip Mandal, Prabal K Maiti

Phys Chem Chem Phys· August 2024

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Computational analysis of pathogen-host interactome for fast and low-risk in-silico drug repurposing in emerging viral threats like Mpox.
Debarati Paul, Sovan Saha, Subhadip Basu, Tapabrata Chakraborti

Sci Rep· August 2024

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EPI-SF: essential protein identification in protein interaction networks using sequence features.
Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri

PeerJ· March 2024

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RUBic: rapid unsupervised biclustering.
Brijesh K Sriwastava, Anup Kumar Halder, Subhadip Basu, Tapabrata Chakraborti

BMC Bioinformatics· November 2023

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Correction: Deep-Fuzz: A synergistic integration of deep learning and fuzzy water flows for fine-grained nuclei segmentation in digital pathology.
Nirmal Das, Satadal Saha, Mita Nasipuri, Subhadip Basu, Tapabrata Chakraborti

PLoS One· November 2023

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DensePPI: A Novel Image-Based Deep Learning Method for Prediction of Protein-Protein Interactions.
Aanzil Akram Halsana, Tapas Chakroborty, Anup Kumar Halder, Subhadip Basu

IEEE Trans Nanobioscience· October 2023

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Utilization of DNA and 2D metal oxide interaction for an optical biosensor.
Partha Kumbhakar, Indrani Das Jana, Subhadip Basu, Sandip Mandal, Saptarshi Banerjee, Basudev Lahiri

Phys Chem Chem Phys· July 2023

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-4-Modified Isotetrones Prevent Biofilm Growth and Persister Cell Resuscitation in .
Kingshuk Bag, Aditya Kumar Pal, Subhadip Basu, Mamta Singla, Biplab Sarkar

ACS Omega· June 2023

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Deep-Fuzz: A synergistic integration of deep learning and fuzzy water flows for fine-grained nuclei segmentation in digital pathology.
Nirmal Das, Satadal Saha, Mita Nasipuri, Subhadip Basu, Tapabrata Chakraborti

PLoS One· June 2023

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Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human-Coronavirus Family Interactome.
Soumyendu Sekhar Bandyopadhyay, Anup Kumar Halder, Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu

Vaccines (Basel)· February 2023

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A computational study on strontium ion modified hydroxyapatite-fibronectin interactions.
Subhadip Basu, Bikramjit Basu, Prabal K Maiti

Phys Chem Chem Phys· November 2022

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In silico study on probing atomistic insights into structural stability and tensile properties of Fe-doped hydroxyapatite single crystals.
Subhadip Basu, Shubhadeep Nag, Nihal B Kottan, Bikramjit Basu

Sci Rep· November 2022

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PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms.
Kaustav Sengupta, Sovan Saha, Anup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu

Front Genet· September 2022

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ML-DTD: Machine Learning-Based Drug Target Discovery for the Potential Treatment of COVID-19.
Sovan Saha, Piyali Chatterjee, Anup Kumar Halder, Mita Nasipuri, Subhadip Basu

Vaccines (Basel)· September 2022

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