Publications by authors named "Sudeep D Ghate"

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In silico identification of potential 2-thioxothiazolidin-4-one derivatives against peroxisome proliferator-activated receptor-gamma by molecular docking, MM-GBSA, molecular dynamic simulation, and toxicity studies.
Mahendra Gowdru Srinivasa, Manohar M, Sudeep D Ghate, Shivakiran Alva, Vinay C Sangamesh

J Biomol Struct Dyn· October 2025

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Azole resistance: insights from Y132 substitutions in sterol 14α-demethylase utilizing molecular dynamics simulations.
R Shyama Prasad Rao, Larina Pinto, Renuka Suravajhala, Belle Damodara Shenoy, V K Sashindran, Sudeep D Ghate

J Biomol Struct Dyn· August 2025

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In Vitro Cytotoxic Potential and Integrated Network Pharmacology, Molecular Docking and Molecular Dynamic Approaches to Decipher the Mechanism of Gymnostachyum febrifugum Benth., in the Treatment of Breast Cancer.
K J Spandana, Wilson Joel Rodrigues, Sudeep D Ghate, R Shyama Prasad Rao, K R Chandrashekar

Appl Biochem Biotechnol· May 2025

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Benzothiazole derivatives as p53-MDM2 inhibitors: design, ADMET predictions, molecular docking, MM-GBSA Assay, MD simulations studies.
Shridhar Deshpande N, Shivakumar, Udaya Kumar D, Sudeep D Ghate, Sheshagiri R Dixit

J Biomol Struct Dyn· April 2025

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Azole resistance: patterns of amino acid substitutions in Candida sterol 14α-demethylase.
R Shyama Prasad Rao, Larina Pinto, Rajesh P Shastry, Tikam Chand Dakal, Prashanth Suravajhala, Sudeep D Ghate

Antonie Van Leeuwenhoek· April 2025

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Impact of Missense Variants on the Structure and Function of Polycystic Ovary Syndrome-Associated HSD17B1 Gene.
Prajna Bhandary, Sudeep D Ghate, Prakash Patil, Praveenkumar Shetty, Prasanna Kumar Shetty

Biochem Genet· April 2025

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In silico identification of potential phytochemical inhibitors for mpox virus: molecular docking, MD simulation, and ADMET studies.
Sudeep D Ghate, Larina Pinto, Shivakiran Alva, Mahendra Gowdru Srinivasa, Rajani Kanth Vangala

Mol Divers· December 2024

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Emergence of rare and low abundant anaerobic gut Firmicutes is associated with a significant downfall of Klebsiella in human colon cancer.
Rajesh P Shastry, Sudeep D Ghate, Asif Hameed, R Shyama Prasad Rao, Yashodhar P Bhandary

Microb Pathog· August 2024

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Extent of Virulence and Antibiotic Resistance Genes in Helicobacter pylori and Campylobacteria.
R Shyama Prasad Rao, Sudeep D Ghate, Larina Pinto, Prashanth Suravajhala, Prakash Patil

Curr Microbiol· April 2024

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Overexpression of a membrane transport system MSMEG_1381 and MSMEG_1382 confers multidrug resistance in Mycobacterium smegmatis.
S Salini, Balaji Muralikrishnan, Sinchana G Bhat, Sudeep D Ghate, R Shyama Prasad Rao

Microb Pathog· December 2023

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Development of novel thiazolidine-2,4-dione derivatives as PPAR-γ agonists through design, synthesis, computational docking, MD simulation, and comprehensive and evaluation.
Mahendra Gowdru Srinivasa, Revanasiddappa B C, Ashwini Prabhu, Vinitha Rani, Sudeep D Ghate

RSC Med Chem· November 2023

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Functional network analysis identifies multiple virulence and antibiotic resistance targets in Stenotrophomonas maltophilia.
Larina Pinto, Rajesh P Shastry, Shivakiran Alva, R Shyama Prasad Rao, Sudeep D Ghate

Microb Pathog· October 2023

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Identification of key gene signatures and their characterization by expression correlation with drug sensitivity in smoking-associated oral squamous cell carcinoma.
Pavan Gollapalli, Dhananjay Alagundagi, Sudeep D Ghate, Vijith V Shetty, Praveenkumar Shetty

J Cancer Res Ther· October 2023

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Efficacy of HDAC inhibitors and epigenetic modulation in the amelioration of synovial inflammation, cellular invasion, and bone erosion in rheumatoid arthritis pathogenesis.
M Vijaykrishnaraj, Prakash Patil, Sudeep D Ghate, Adithi K Bhandary, Vikram M Haridas

Int Immunopharmacol· September 2023

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Integrated molecular-network analysis reveals infertility-associated key genes and transcription factors in the non-obstructive azoospermia.
Dhananjay B Alagundagi, Sudeep D Ghate, Prasannakumar Shetty, Pavan Gollapalli, Praveenkumar Shetty

Eur J Obstet Gynecol Reprod Biol· September 2023

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Development of microbial enrichments for simultaneous removal of sulfur and nitrogenous metabolites in saline water aquaculture.
Prasanna Kumar Patil, Vinay Tharabenahalli Nagaraju, Viswanathan Baskaran, Satheesha Avunje, Rajesh Rameshbabu, Sudeep D Ghate

J Appl Microbiol· August 2023

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Early diagnostic and prognostic biomarkers for gastric cancer: systems-level molecular basis of subsequent alterations in gastric mucosa from chronic atrophic gastritis to gastric cancer.
Tamizh G Selvan, Pavan Gollapalli, Santosh H S Kumar, Sudeep D Ghate

J Genet Eng Biotechnol· August 2023

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Molecular detection of monkeypox and related viruses: challenges and opportunities.
Sudeep D Ghate, Prashanth Suravajhala, Prakash Patil, Rajani Kanth Vangala, Praveenkumar Shetty

Virus Genes· June 2023

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Unveiling the role of hub proteins in controlling quorum sensing regulated virulence through analogues in Pseudomonas aeruginosa PAO1: A functional protein-protein network biology approach.
Sukesh Kumar Bajire, Sudeep D Ghate, Shriya Shetty, Shukla Banerjee, R Shyama Prasad Rao

Biochem Biophys Res Commun· June 2023

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Inferring Recombination Events in SARS-CoV-2 Variants In Silico.
Nihal Najeeb, Aparna B Murukan, Anagha Renjitha, Malavika Jayaram, Ayisha A Jabbar, Sudeep D Ghate

Adv Exp Med Biol· June 2023

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Genomic potential for exopolysaccharide production and differential polysaccharide degradation in closely related Alteromonas sp. PRIM-21 and Alteromonas fortis 1.
Punchappady Devasya Rekha, Rajesh P Shastry, Asif Hameed, Sudeep D Ghate, Ananthapadmanabha Bhagwath Arun

Antonie Van Leeuwenhoek· January 2023

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Prevalence and heterogeneity of antibiotic resistance genes in Orientia tsutsugamushi and other rickettsial genomes.
R Shyama Prasad Rao, Sudeep D Ghate, Rajesh P Shastry, Krishna Kurthkoti, Prashanth Suravajhala

Microb Pathog· January 2023

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Exploring breast cancer exosomes for novel biomarkers of potential diagnostic and prognostic importance.
Dhananjay B Alagundagi, Sudeep D Ghate, Vinay Kumar J Rajendra, Pavan Gollapalli, Vijith V Shetty

3 Biotech· January 2023

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Functional analysis of Escherichia coli K12 toxin-antitoxin systems as novel drug targets using a network biology approach.
Shriya Shetty, Rajesh P Shastry, Veena A Shetty, Prakash Patil, Praveenkumar Shetty, Sudeep D Ghate

Microb Pathog· August 2022

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Molecular Insights on the Possible Role of Annexin A2 in COVID-19 Pathogenesis and Post-Infection Complications.
Prakash Patil, Praveenkumar Shetty, Nithin Kuriakose, Pavan Gollapalli, Sukanya Shetty, Sudeep D Ghate

Int J Mol Sci· October 2021

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