Publications by authors named "Sumit Mukherjee"

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Identification of a chromatin-modifying gene-histone lysine N-methyl transferase (KMT2C/MLL3) as a potential immunomodulator oncogene in Indian pancreatic cancer patients.
Sounetra Choudhury, Akash Bararia, Arunima Maiti, Sayan Saha, Sumit Mukherjee

Eur J Med Res· December 2025

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DeepTarget predicts anti-cancer mechanisms of action of small molecules by integrating drug and genetic screens.
Sanju Sinha, Neelam Sinha, Marlenne Perales, Adi Tarrab, Trinh Nguyen, Sumit Mukherjee

NPJ Precis Oncol· November 2025

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Longitudinal liquid biopsy identifies an early predictive biomarker of immune checkpoint blockade response in head and neck squamous cell carcinoma.
Binbin Wang, Robert Saddawi-Konefka, Lauren M Clubb, Shiqi Tang, Di Wu, Sumit Mukherjee

Nat Commun· September 2025

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A multi-phase approach using supervised algorithms and clinical models to generate high-accuracy signatures for pancreatic cancer.
Akash Bararia, Agniswar Chakraborty, Gourav Ghosh, Debabrata Ghosh Dastidar, Sumit Mukherjee

Comput Biol Med· August 2025

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C14DM Ablation Leads to Reduced Tolerance to Plasma Membrane Stress and Increased Drug Sensitivity in .
Samrat Moitra, Sumit Mukherjee, Veronica L Hernandez, Kai Zhang

Int J Mol Sci· August 2025

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Pan-cancer prediction of tumor immune activation and response to immune checkpoint blockade from tumor transcriptomics and histopathology.
Sumit Mukherjee, Sumeet Patiyal, Lipika R Pal, Tian-Gen Chang, Sumona Biswas

bioRxiv· June 2025

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Pan-cancer analysis of cancer-specific transcript isoforms reveals the regulatory impact of isoform switching on the alteration of the interplay between RBPs and miRNAs in cancers.
Sukhen DAS Mandal, Sumit Mukherjee

J Biosci· May 2025

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Pitfalls in performing genome-wide association studies on ratio traits.
Zachary R McCaw, Rounak Dey, Hari Somineni, David Amar, Sumit Mukherjee

HGG Adv· April 2025

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Identification of KCNJ5 gene an adverse prognosis associated novel onco-ionchannel in Indian pancreatic cancer cohort.
Akash Bararia, Arunima Maiti, Gourav Ghosh, Deepyaman Das, Debabrata Ghosh Dastidar, Sumit Mukherjee

Discov Oncol· February 2025

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Exome re-analysis increases the diagnostic yield of monogenic diseases in children.
Atanu Kumar Dutta, Niladri Sekhar Bhunia, Rohit Bhowmik, Nihar Ranjan Mishra, Rimjhim Sonowal, Sumit Mukherjee

Pediatr Neonatol· January 2025

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Progression of the Immune Escape Mechanism in Tumors.
Sheila Spada, Sumit Mukherjee

Biology (Basel)· November 2024

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Corrigendum: Dietary polyphenols, resveratrol and pterostilbene exhibit antitumor activity on an HPV E6-positive cervical cancer model: an and analysis.
Kaushiki Chatterjee, Sumit Mukherjee, Jonathan Vanmanen, Probal Banerjee, Jimmie E Fata

Front Oncol· October 2024

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A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA Therapeutics.
Sumit Mukherjee, Sunanda Biswas Mukherjee, Danny Barash

Methods Mol Biol· September 2024

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EmbedGEM: a framework to evaluate the utility of embeddings for genetic discovery.
Sumit Mukherjee, Zachary R McCaw, Jingwen Pei, Anna Merkoulovitch, Tom Soare

Bioinform Adv· September 2024

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PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors.
Sanju Sinha, Rahulsimham Vegesna, Sumit Mukherjee, Ashwin V Kammula, Saugato Rahman Dhruba

Nat Cancer· June 2024

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Vibrational, optical, and photocatalytic properties of ZnO/layered carbon nanocomposite synthesized by ball milling.
Sandip Das, Subhamay Pramanik, Sumit Mukherjee, Chinmoy Rajak, Biswanath Mukherjee

J Phys Condens Matter· June 2024

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Designing RNA switches for synthetic biology using inverse-RNA-folding.
Sumit Mukherjee, Danny Barash

Trends Biotechnol· May 2024

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Factors affecting heterogeneity in breast cancer microenvironment: A narrative mini review.
Anirban Ganguly, Sumit Mukherjee, Kaushiki Chatterjee, Sheila Spada

Int Rev Cell Mol Biol· April 2024

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Editorial: Spatial immune cell heterogeneity in the tumor microenvironment.
Anirban Ganguly, Sumit Mukherjee, Sheila Spada

Front Immunol· March 2024

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Assessment of differentially private synthetic data for utility and fairness in end-to-end machine learning pipelines for tabular data.
Mayana Pereira, Meghana Kshirsagar, Sumit Mukherjee, Rahul Dodhia, Juan Lavista Ferres

PLoS One· February 2024

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The mature N-termini of effector proteins confer specificity of export.
Muhammad M Hasan, Alexander J Polino, Sumit Mukherjee, Barbara Vaupel, Daniel E Goldberg

mBio· October 2023

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Using Data Science and a Health Equity Lens to Identify Long-COVID Sequelae Among Medically Underserved Populations.
Md Nasir, Nicole Cook, Daniel Parras, Sumit Mukherjee, Geralyn Miller

J Health Care Poor Underserved· July 2023

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A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding.
Sumit Mukherjee, Matan Drory Retwitzer, Sara M Hubbell, Michelle M Meyer, Danny Barash

Brief Bioinform· May 2023

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Activation of the Egress Effector Subtilisin-Like Protease 1 Is Mediated by Plasmepsin X Destruction of the Prodomain.
Sumit Mukherjee, Armiyaw S Nasamu, Kelly C Rubiano, Daniel E Goldberg

mBio· April 2023

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The Landscape of Expressed Chimeric Transcripts in the Blood of Severe COVID-19 Infected Patients.
Sunanda Biswas Mukherjee, Rajesh Detroja, Sumit Mukherjee, Milana Frenkel-Morgenstern

Viruses· February 2023

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