Publications by authors named "Sven FindeiSS"

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A
Assessing the Quality of Cotranscriptional Folding Simulations.
Felix Kühnl, Peter F Stadler, Sven Findeiß

Methods Mol Biol· May 2024

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Tailored machine learning models for functional RNA detection in genome-wide screens.
Christopher Klapproth, Siegfried Zötzsche, Felix Kühnl, Jörg Fallmann, Peter F Stadler

NAR Genom Bioinform· September 2023

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RNA Design Principles for Riboswitches that Regulate RNase P-Mediated tRNA Processing.
Anna Ender, Peter F Stadler, Mario Mörl, Sven Findeiß

Methods Mol Biol· June 2022

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Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes.
Anna Ender, Nadine Grafl, Tim Kolberg, Sven Findeiß, Peter F Stadler

RNA· April 2022

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Common Features in lncRNA Annotation and Classification: A Survey.
Christopher Klapproth, Rituparno Sen, Peter F Stadler, Sven Findeiß, Jörg Fallmann

Noncoding RNA· December 2021

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Beyond Plug and Pray: Context Sensitivity and Design of Artificial Neomycin Riboswitches.
Christian Günzel, Felix Kühnl, Katharina Arnold, Sven Findeiß, Christina E Weinberg

RNA Biol· April 2021

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Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch.
Anna Ender, Maja Etzel, Stefan Hammer, Sven Findeiß, Peter Stadler

Nucleic Acids Res· February 2021

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Evolving methods for rational de novo design of functional RNA molecules.
Stefan Hammer, Christian Günzel, Mario Mörl, Sven Findeiß

Methods· May 2019

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In silico design of ligand triggered RNA switches.
Sven Findeiß, Stefan Hammer, Michael T Wolfinger, Felix Kühnl, Christoph Flamm

Methods· July 2018

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Quantitative Characterization of Translational Riboregulators Using an in Vitro Transcription-Translation System.
Anis Senoussi, Jonathan Lee Tin Wah, Yoshihiro Shimizu, Jérôme Robert, Alfonso Jaramillo, Sven Findeiss

ACS Synth Biol· May 2018

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RNAblueprint: flexible multiple target nucleic acid sequence design.
Stefan Hammer, Birgit Tschiatschek, Christoph Flamm, Ivo L Hofacker, Sven Findeiß

Bioinformatics· September 2017

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Design of Artificial Riboswitches as Biosensors.
Sven Findeiß, Maja Etzel, Sebastian Will, Mario Mörl, Peter F Stadler

Sensors (Basel)· August 2017

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Applicability of a computational design approach for synthetic riboswitches.
Gesine Domin, Sven Findeiß, Manja Wachsmuth, Sebastian Will, Peter F Stadler

Nucleic Acids Res· April 2017

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Design criteria for synthetic riboswitches acting on transcription.
Manja Wachsmuth, Gesine Domin, Ronny Lorenz, Robert Serfling, Sven Findeiß

RNA Biol· December 2015

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Design of transcription regulating riboswitches.
Sven Findeiß, Manja Wachsmuth, Mario Mörl, Peter F Stadler

Methods Enzymol· September 2015

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Bioinformatics of prokaryotic RNAs.
Rolf Backofen, Fabian Amman, Fabrizio Costa, Sven Findeiß, Andreas S Richter

RNA Biol· March 2015

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TSSAR: TSS annotation regime for dRNA-seq data.
Fabian Amman, Michael T Wolfinger, Ronny Lorenz, Ivo L Hofacker, Peter F Stadler

BMC Bioinformatics· March 2014

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Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.
Gero Doose, Maria Alexis, Rebecca Kirsch, Sven Findeiß, David Langenberger

RNA Biol· July 2013

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Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
Stephan A Müller, Sven Findeiß, Sandy R Pernitzsch, Dirk K Wissenbach, Peter F Stadler

J Proteomics· June 2013

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D
De novo design of a synthetic riboswitch that regulates transcription termination.
Manja Wachsmuth, Sven Findeiß, Nadine Weissheimer, Peter F Stadler, Mario Mörl

Nucleic Acids Res· February 2013

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Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.
Cornelius Schmidtke, Sven Findeiss, Cynthia M Sharma, Juliane Kuhfuss, Steve Hoffmann

Nucleic Acids Res· March 2012

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Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids.
Sven Findeiss, Jan Engelhardt, Sonja J Prohaska, Peter F Stadler

Biochimie· November 2011

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Traces of post-transcriptional RNA modifications in deep sequencing data.
Sven Findeiss, David Langenberger, Peter F Stadler, Steve Hoffmann

Biol Chem· April 2011

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RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.
Stefan Washietl, Sven Findeiss, Stephan A Müller, Stefan Kalkhof, Martin von Bergen

RNA· April 2011

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Proteinortho: detection of (co-)orthologs in large-scale analysis.
Marcus Lechner, Sven Findeiss, Lydia Steiner, Manja Marz, Peter F Stadler

BMC Bioinformatics· April 2011

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