Publications by authors named "Sven Rahmann"

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Cleanifier: Contamination removal from microbial sequences using spaced seeds of a human pangenome index.
Jens Zentgraf, Johanna Elena Schmitz, Sven Rahmann

Bioinformatics· November 2025

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Sustainable data analysis with Snakemake.
Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B Hall, Peter C van Dyken, Sven Rahmann

F1000Res· September 2025

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Activation of NF-κB Signaling by Optogenetic Clustering of IKKα and β.
Alexandra Anna Maria Fischer, Markus Michael Kramer, Miguel Baños, Merlin Moritz Grimm, Manfred Fliegauf, Sven Rahmann

Adv Biol (Weinh)· September 2025

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Swiftly identifying strongly unique k-mers.
Jens Zentgraf, Sven Rahmann

Algorithms Mol Biol· July 2025

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A comprehensive review and evaluation of species richness estimation.
Johanna Elena Schmitz, Sven Rahmann

Brief Bioinform· March 2025

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Tumor Necrosis Factor-Alpha Inhibits the Replication of Patient-Derived Archetype BK Polyomavirus While Activating Rearranged Strains.
Lise Lauterbach-Rivière, Lucia Thuringer, Pascal Feld, Lina Kathrin Toews, Jessica Schüssler, Sven Rahmann

J Med Virol· February 2025

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NGS Detects Extensive Genomic Alterations in Survivors of Irradiated Normal Human Fibroblast Cells.
Aashish Soni, Daniela Beisser, Emil Mladenov, Matthias Höller, Inken Wohlers, Sven Rahmann

Radiat Res· January 2025

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Lossless Approximate Pattern Matching: Automated Design of Efficient Search Schemes.
Luca Renders, Lore Depuydt, Sven Rahmann, Jan Fostier

J Comput Biol· October 2024

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Author Correction: A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.
Tatsiana Ryl, Elena Afanasyeva, Till Hartmann, Melanie Schwermer, Markus Schneider, Sven Rahmann

Commun Biol· September 2024

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Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics.
Pascal Hirsch, Leidy-Alejandra G Molano, Annika Engel, Jens Zentgraf, Sven Rahmann

Nucleic Acids Res· July 2024

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A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.
Tatsiana Ryl, Elena Afanasyeva, Till Hartmann, Melanie Schwermer, Markus Schneider, Sven Rahmann

Commun Biol· July 2024

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Three-Year Mortality of Older Hospitalized Patients with Osteosarcopenia: Data from the OsteoSys Study.
Maryam Pourhassan, Bjoern Buehring, Ulrik Stervbo, Sven Rahmann, Felix Mölder

Nutrients· April 2024

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EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery.
Johanna Elena Schmitz, Nihit Aggarwal, Lukas Laufer, Jörn Walter, Abdulrahman Salhab, Sven Rahmann

Bioinformatics· March 2024

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Pancreatic cancer acquires resistance to MAPK pathway inhibition by clonal expansion and adaptive DNA hypermethylation.
Laura K Godfrey, Jan Forster, Sven-Thorsten Liffers, Christopher Schröder, Johannes Köster, Sven Rahmann

Clin Epigenetics· January 2024

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Non-responsiveness to cardioprotection by ischaemic preconditioning in Ossabaw minipigs with genetic predisposition to, but without the phenotype of the metabolic syndrome.
Petra Kleinbongard, Helmut Raphael Lieder, Andreas Skyschally, Mouhamad Alloosh, Axel Gödecke, Sven Rahmann

Basic Res Cardiol· November 2022

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Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing.
Alicia Isabell Tüns, Till Hartmann, Simon Magin, Rocío Chamorro González, Anton George Henssen, Sven Rahmann

Front Genet· May 2022

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GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.
Julia Markowski, Rieke Kempfer, Alexander Kukalev, Ibai Irastorza-Azcarate, Gesa Loof, Sven Rahmann

Bioinformatics· October 2021

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Rapid T-cell receptor interaction grouping with ting.
Felix Mölder, Ulrik Stervbo, Lucie Loyal, Petra Bacher, Nina Babel, Sven Rahmann

Bioinformatics· October 2021

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Osteosarcopenia, an Asymmetrical Overlap of Two Connected Syndromes: Data from the OsteoSys Study.
Maryam Pourhassan, Bjoern Buehring, Ulrik Stervbo, Sven Rahmann, Felix Mölder

Nutrients· October 2021

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Detecting high-scoring local alignments in pangenome graphs.
Tizian Schulz, Roland Wittler, Sven Rahmann, Faraz Hach, Jens Stoye

Bioinformatics· August 2021

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Fast lightweight accurate xenograft sorting.
Jens Zentgraf, Sven Rahmann

Algorithms Mol Biol· April 2021

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Proteomic and bioinformatic profiling of neutrophils in CLL reveals functional defects that predispose to bacterial infections.
Nirojah Subramaniam, Jenny Bottek, Stephanie Thiebes, Kristina Zec, Matthias Kudla, Sven Rahmann

Blood Adv· March 2021

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Machine learning reveals a PD-L1-independent prediction of response to immunotherapy of non-small cell lung cancer by gene expression context.
Marcel Wiesweg, Fabian Mairinger, Henning Reis, Moritz Goetz, Jens Kollmeier, Sven Rahmann

Eur J Cancer· November 2020

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Epitope similarity cannot explain the pre-formed T cell immunity towards structural SARS-CoV-2 proteins.
Ulrik Stervbo, Sven Rahmann, Toralf Roch, Timm H Westhoff, Nina Babel

Sci Rep· November 2020

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A germ cell-specific ageing pattern in otherwise healthy men.
Sandra Laurentino, Jann-Frederik Cremers, Bernhard Horsthemke, Frank Tüttelmann, Karen Czeloth, Sven Rahmann

Aging Cell· October 2020

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