Publications by authors named "Svenja Simon"

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A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting.
Sarah M Hücker, Sonja Vanderhaeghen, Isabel Abellan-Schneyder, Romy Wecko, Svenja Simon

BMC Evol Biol· February 2018

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Probiotic Enterococcus faecalis Symbioflor down regulates virulence genes of EHEC in vitro and decrease pathogenicity in a Caenorhabditis elegans model.
Klaus Neuhaus, Marina C Lamparter, Benjamin Zölch, Richard Landstorfer, Svenja Simon

Arch Microbiol· March 2017

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Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq - ryhB encodes the regulatory RNA RyhB and a peptide, RyhP.
Klaus Neuhaus, Richard Landstorfer, Svenja Simon, Steffen Schober, Patrick R Wright

BMC Genomics· February 2017

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Transcriptional and translational regulation by RNA thermometers, riboswitches and the sRNA DsrA in Escherichia coli O157:H7 Sakai under combined cold and osmotic stress adaptation.
Sarah Maria Hücker, Svenja Simon, Siegfried Scherer, Klaus Neuhaus

FEMS Microbiol Lett· January 2017

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Proteomic Profiling of Serological Responses to Aspergillus fumigatus Antigens in Patients with Invasive Aspergillosis.
Janka Teutschbein, Svenja Simon, Jasmin Lother, Jan Springer, Peter Hortschansky

J Proteome Res· May 2016

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Draft Genome Sequences of Three European Laboratory Derivatives from Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933, Including Two Plasmids.
Lea Fellner, Christopher Huptas, Svenja Simon, Anna Mühlig, Siegfried Scherer

Genome Announc· April 2016

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Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC).
Klaus Neuhaus, Richard Landstorfer, Lea Fellner, Svenja Simon, Andrea Schafferhans

BMC Genomics· February 2016

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Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting.
Lea Fellner, Svenja Simon, Christian Scherling, Michael Witting, Steffen Schober

BMC Evol Biol· December 2015

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Mining rare associations between biological ontologies.
Fernando Benites, Svenja Simon, Elena Sapozhnikova

PLoS One· September 2014

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Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces.
Richard Landstorfer, Svenja Simon, Steffen Schober, Daniel Keim, Siegfried Scherer

BMC Genomics· May 2014

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Phenotype of htgA (mbiA), a recently evolved orphan gene of Escherichia coli and Shigella, completely overlapping in antisense to yaaW.
Lea Fellner, Niklas Bechtel, Michael A Witting, Svenja Simon, Philippe Schmitt-Kopplin

FEMS Microbiol Lett· January 2014

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Multivariate analysis of flow cytometric data using decision trees.
Svenja Simon, Reinhard Guthke, Thomas Kamradt, Oliver Frey

Front Microbiol· October 2012

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