Publications by authors named "Theodore Pak"

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Syndromic Analysis of Sepsis Cohorts Using Large Language Models.
Theodore R Pak, Sanjat Kanjilal, Caroline S McKenna, Alexander Hoffner-Heinike, Chanu Rhee

JAMA Netw Open· October 2025

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Hospital unit colonization pressure and nosocomial acquisition of drug susceptible and drug resistant pathogens.
Luke Sagers, Ziming Wei, Caroline McKenna, Christina Chan, Anna A Agan, Theodore R Pak

medRxiv· June 2025

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Association Between the Sequence of β-Lactam and Vancomycin Administration and Mortality in Patients With Suspected Sepsis.
Yutaka Kondo, Michael Klompas, Caroline S McKenna, Theodore R Pak, Claire N Shappell

Clin Infect Dis· April 2025

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Protecting patients and peers from healthcare personnel with respiratory viral infections.
Michael Klompas, Theodore Pak, Chanu Rhee

Infect Control Hosp Epidemiol· January 2025

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Assessment of Racial, Ethnic, and Sex-Based Disparities in Time-to-Antibiotics and Sepsis Outcomes in a Large Multihospital Cohort.
Theodore R Pak, Sarimer M Sánchez, Caroline S McKenna, Chanu Rhee, Michael Klompas

Crit Care Med· December 2024

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Testing and Masking Policies and Hospital-Onset Respiratory Viral Infections.
Theodore R Pak, Tom Chen, Sanjat Kanjilal, Caroline S McKenna, Chanu Rhee

JAMA Netw Open· November 2024

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Morbidity and Mortality of Hospital-Onset SARS-CoV-2 Infections Due to Omicron Versus Prior Variants : A Propensity-Matched Analysis.
Michael Klompas, Caroline S McKenna, Sanjat Kanjilal, Theodore Pak, Chanu Rhee

Ann Intern Med· August 2024

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In Support of Universal Admission Testing for SARS-CoV-2 During Significant Community Transmission.
Chanu Rhee, Michael Klompas, Theodore R Pak, Julia R Köhler

Clin Infect Dis· February 2024

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Risk of Misleading Conclusions in Observational Studies of Time-to-Antibiotics and Mortality in Suspected Sepsis.
Theodore R Pak, Jessica Young, Caroline S McKenna, Anna Agan, Laura DelloStritto

Clin Infect Dis· November 2023

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Discontinuation of Universal Admission Testing for SARS-CoV-2 and Hospital-Onset COVID-19 Infections in England and Scotland.
Theodore R Pak, Chanu Rhee, Rui Wang, Michael Klompas

JAMA Intern Med· August 2023

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Timing and Spectrum of Antibiotic Treatment for Suspected Sepsis and Septic Shock: Why so Controversial?
Theodore R Pak, Chanu Rhee, Michael Klompas

Infect Dis Clin North Am· December 2022

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Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology.
Waleed Javaid, Jordan Ehni, Ana S Gonzalez-Reiche, Juan Manuel Carreño, Elena Hirsch, Theodore R Pak

Clin Infect Dis· December 2021

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PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks.
Ana Berbel Caban, Theodore R Pak, Ajay Obla, Amy C Dupper, Kieran I Chacko

Genome Med· November 2020

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Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis.
Pedro H Oliveira, John W Ribis, Elizabeth M Garrett, Dominika Trzilova, Alex Kim, Theodore Pak

Nat Microbiol· January 2020

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A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.
Mitchell J Sullivan, Deena R Altman, Kieran I Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R Pak

J Clin Microbiol· December 2019

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Genome Plasticity of -Defective Staphylococcus aureus during Clinical Infection.
Deena R Altman, Mitchell J Sullivan, Kieran I Chacko, Divya Balasubramanian, Theodore R Pak

Infect Immun· October 2018

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Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases.
Daniela Michlmayr, Theodore R Pak, Adeeb H Rahman, El-Ad David Amir, Eun-Young Kim

Mol Syst Biol· August 2018

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Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia.
Kieran I Chacko, Mitchell J Sullivan, Colleen Beckford, Deena R Altman, Brianne Ciferri, Theodore R Pak

Antimicrob Agents Chemother· April 2018

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Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records.
Theodore R Pak, Kieran I Chacko, Timothy O'Donnell, Shirish S Huprikar, Harm van Bakel

Infect Control Hosp Epidemiol· December 2017

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Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient.
Ali Bashir, Oliver Attie, Mitchell Sullivan, Robert Sebra, Kavindra V Singh, Theodore Pak

PLoS One· September 2017

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High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures.
Rebecca E Hamlin, Adeeb Rahman, Theodore R Pak, Kevin Maringer, Ignacio Mena

JCI Insight· July 2017

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A user-editable web-based platform to streamline clinical information flow.
Mark Finkelstein, Ammar Siddiqui, Theodore Pak, Kevin Hu, Chloe Ciccariello

Stud Health Technol Inform· November 2016

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Reply to Lesho.
Theodore R Pak, Andrew Kasarskis

Clin Infect Dis· April 2016

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How next-generation sequencing and multiscale data analysis will transform infectious disease management.
Theodore R Pak, Andrew Kasarskis

Clin Infect Dis· December 2015

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Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.
Theodore R Pak, Deena R Altman, Oliver Attie, Robert Sebra, Camille L Hamula

Antimicrob Agents Chemother· November 2015

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