Publications by authors named "Therese Commes"

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Acute myeloid leukemia risk stratification in younger and older patients through transcriptomic machine learning models.
Raíssa Silva, Cédric Riedel, Maïlis Amico, Jerome Reboul, Benoit Guibert, Thérèse Commes

Sci Rep· November 2025

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The ganglioside GD3 and its synthase (ST8SIA1) as novel senescence markers associated with osteoarthritis.
Christina Fissoun, Georges Maroun, Raissa Silva, Margot Milano, Benoit Guibert, Thérèse Commes

Geroscience· October 2025

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A strong internal promoter drives massive expression of YEATS-domain devoid MLLT3 transcripts in HSC and most lethal AML.
Chloé Bessière, Ahmed Zamani, Romain Pfeifer, Sandra Dailhau, Camille Marchet, Thérèse Commes

Cancer Commun (Lond)· March 2025

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Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer data.
Chloé Bessière, Haoliang Xue, Benoit Guibert, Anthony Boureux, Florence Rufflé, Thérèse Commes

Genome Biol· October 2024

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Effective requesting method to detect fusion transcripts in chronic myelomonocytic leukemia RNA-seq.
Florence Rufflé, Jérôme Reboul, Anthony Boureux, Benoit Guibert, Chloé Bessière, Thérèse Commes

NAR Genom Bioinform· September 2024

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Gene Expression Signature Associated with Clinical Outcome in ALK-Positive Anaplastic Large Cell Lymphoma.
Camille Daugrois, Chloé Bessiere, Sébastien Dejean, Véronique Anton-Leberre, Thérèse Commes

Cancers (Basel)· November 2021

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Kmerator Suite: design of specific -mer signatures and automatic metadata discovery in large RNA-seq datasets.
Sébastien Riquier, Chloé Bessiere, Benoit Guibert, Anne-Laure Bouge, Anthony Boureux, Thérèse Commes

NAR Genom Bioinform· September 2021

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Long non-coding RNA exploration for mesenchymal stem cell characterisation.
Sébastien Riquier, Marc Mathieu, Chloé Bessiere, Anthony Boureux, Florence Ruffle, Thérèse Commes

BMC Genomics· June 2021

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Recurrent Genetic Abnormalities in Human Pluripotent Stem Cells: Definition and Routine Detection in Culture Supernatant by Targeted Droplet Digital PCR.
Said Assou, Nicolas Girault, Mathilde Plinet, Julien Bouckenheimer, Caroline Sansac, Thérèse Commes

Stem Cell Reports· January 2020

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RNA-Seq Analysis to Detect Abnormal Fusion Transcripts Linked to Chromothripsis.
Anne-Laure Bougé, Florence Rufflé, Sébastien Riquier, Benoit Guibert, Jérôme Audoux, Thérèse Commes

Methods Mol Biol· February 2019

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New insights into diagnosis and therapeutic options for proliferative hepatoblastoma.
Katarzyna B Hooks, Jérôme Audoux, Helena Fazli, Sarah Lesjean, Tony Ernault, Thérèse Commes

Hepatology· July 2018

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Differential long non-coding RNA expression profiles in human oocytes and cumulus cells.
Julien Bouckenheimer, Patricia Fauque, Charles-Henri Lecellier, Céline Bruno, Thérèse Commes

Sci Rep· February 2018

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DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Jérôme Audoux, Nicolas Philippe, Rayan Chikhi, Mikaël Salson, Mélina Gallopin, Thérèse Commes

Genome Biol· December 2017

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SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines.
Jérôme Audoux, Mikaël Salson, Christophe F Grosset, Sacha Beaumeunier, Jean-Marc Holder, Thérèse Commes

BMC Bioinformatics· September 2017

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New chimeric RNAs in acute myeloid leukemia.
Florence Rufflé, Jerome Audoux, Anthony Boureux, Sacha Beaumeunier, Jean-Baptiste Gaillard, Therese Commes

F1000Res· August 2017

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Long non-coding RNAs in human early embryonic development and their potential in ART.
Julien Bouckenheimer, Said Assou, Sébastien Riquier, Cyrielle Hou, Nicolas Philippe, Thérèse Commes

Hum Reprod Update· December 2016

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On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.
Sacha Beaumeunier, Jérôme Audoux, Anthony Boureux, Florence Ruffle, Thérèse Commes

BioData Min· November 2016

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Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents.
Jane Merlevede, Nathalie Droin, Tingting Qin, Kristen Meldi, Kenichi Yoshida, Thérèse Commes

Nat Commun· February 2016

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Identification of a 20-gene expression-based risk score as a predictor of clinical outcome in chronic lymphocytic leukemia patients.
Elias Bou Samra, Bernard Klein, Thérèse Commes, Jérôme Moreaux

Biomed Res Int· January 2015

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Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.
Nicolas Philippe, Elias Bou Samra, Anthony Boureux, Alban Mancheron, Florence Rufflé, Thérèse Commes

Nucleic Acids Res· March 2014

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Identification of cetrimonium bromide and irinotecan as compounds with synthetic lethality against NDRG1 deficient prostate cancer cells.
Michel D Wissing, Janet Mendonca, Eunice Kim, Eugene Kim, Joong S Shim, Therese Commes

Cancer Biol Ther· May 2013

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CRAC: an integrated approach to the analysis of RNA-seq reads.
Nicolas Philippe, Mikaël Salson, Thérèse Commes, Eric Rivals

Genome Biol· March 2013

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Development of gene expression-based risk score in cytogenetically normal acute myeloid leukemia patients.
Elias Bou Samra, Bernard Klein, Thérèse Commes, Jérôme Moreaux

Oncotarget· August 2012

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New prognostic markers, determined using gene expression analyses, reveal two distinct subtypes of chronic myelomonocytic leukaemia patients.
Elias Bou Samra, Jérôme Moreaux, Fabienne Vacheret, Ken Mills, Florence Rufflé, Thérèse Commes

Br J Haematol· May 2012

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Querying large read collections in main memory: a versatile data structure.
Nicolas Philippe, Mikaël Salson, Thierry Lecroq, Martine Léonard, Thérèse Commes

BMC Bioinformatics· June 2011

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