Publications by authors named "Thomas Athey"

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SmartEM: machine learning-guided electron microscopy.
Yaron Meirovitch, Ishaan Singh Chandok, Core Francisco Park, Pavel Potocek, Lu Mi, Thomas L Athey

Nat Methods· December 2025

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Analysis of smart imaging runtime.
Thomas Athey, Shashata Sawmya, Yaron Meirovitch, Richard Schalek, Pavel Potocek

Appl Microsc· August 2025

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SmartEM: machine-learning guided electron microscopy.
Yaron Meirovitch, Ishaan Singh Chandok, Core Francisco Park, Pavel Potocek, Lu Mi, Thomas L Athey

bioRxiv· May 2025

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Hsf1 is essential for proteotoxic stress response in smyd1b-deficient embryos and fish survival under heat shock.
Huanhuan Xiao, Mofei Li, Yongwang Zhong, Avani Patel, Rui Xu, Thomas W Athey

FASEB J· January 2025

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Preserving Derivative Information while Transforming Neuronal Curves.
Thomas L Athey, Daniel J Tward, Ulrich Mueller, Laurent Younes, Joshua T Vogelstein

Neuroinformatics· January 2024

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BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes.
Thomas L Athey, Matthew A Wright, Marija Pavlovic, Vikram Chandrashekhar, Karl Deisseroth

Neuroinformatics· October 2023

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Preserving Derivative Information while Transforming Neuronal Curves.
Thomas L Athey, Daniel J Tward, Ulrich Mueller, Laurent Younes, Joshua T Vogelstein

ArXiv· August 2023

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A guide to the BRAIN Initiative Cell Census Network data ecosystem.
Michael Hawrylycz, Maryann E Martone, Giorgio A Ascoli, Jan G Bjaalie, Hong-Wei Dong, Thomas L Athey

PLoS Biol· June 2023

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BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes.
Thomas L Athey, Matthew A Wright, Marija Pavlovic, Vikram Chandrashekhar, Karl Deisseroth

bioRxiv· March 2023

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Preserving Derivative Information while Transforming Neuronal Curves.
Thomas L Athey, Daniel J Tward, Ulrich Mueller, Laurent Younes, Joshua T Vogelstein

Res Sq· March 2023

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Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Jean-Baptiste Poline, David N Kennedy, Friedrich T Sommer, Giorgio A Ascoli, David C Van Essen, Thomas L Athey

Neuroinformatics· April 2022

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Hidden Markov modeling for maximum probability neuron reconstruction.
Thomas L Athey, Daniel J Tward, Ulrich Mueller, Joshua T Vogelstein, Michael I Miller

Commun Biol· April 2022

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Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry.
Thomas L Athey, Jacopo Teneggi, Joshua T Vogelstein, Daniel J Tward, Ulrich Mueller

Front Neuroinform· August 2021

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A 7 Tesla Amygdalar-Hippocampal Shape Analysis of Lithium Response in Bipolar Disorder.
Thomas L Athey, Can Ceritoglu, Daniel J Tward, Kwame S Kutten, J Raymond DePaulo

Front Psychiatry· February 2021

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Multiscale Coupling of an Agent-Based Model of Tissue Fibrosis and a Logic-Based Model of Intracellular Signaling.
S Michaela Rikard, Thomas L Athey, Anders R Nelson, Steven L M Christiansen, Jia-Jye Lee

Front Physiol· December 2019

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