Publications by authors named "Thomas Bonacci"

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Mechanisms of USP18 specificity toward ISG15 revealed by paralog sequence analysis comparison.
Thomas Bonacci, Derek L Bolhuis, Nicholas G Brown, Michael J Emanuele

J Biol Chem· July 2025

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DIG-DUBs: mechanisms and functions of ISG15 deconjugation by human and viral cross-reactive ubiquitin proteases.
Thomas Bonacci, Michael J Emanuele

Biochem Soc Trans· July 2025

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USP37 prevents unscheduled replisome unloading through MCM complex deubiquitination.
Derek L Bolhuis, Dalia Fleifel, Thomas Bonacci, Xianxi Wang, Brandon L Mouery

Nat Commun· May 2025

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USP37 prevents unscheduled replisome unloading through MCM complex deubiquitination.
Derek L Bolhuis, Dalia Fleifel, Thomas Bonacci, Xianxi Wang, Brandon L Mouery

bioRxiv· September 2024

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4-1BB-encoding CAR causes cell death via sequestration of the ubiquitin-modifying enzyme A20.
Zhangqi Dou, Thomas Raphael Bonacci, Peishun Shou, Elisa Landoni, Mark G Woodcock

Cell Mol Immunol· August 2024

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Proteomic analysis reveals a PLK1-dependent G2/M degradation program and a role for AKAP2 in coordinating the mitotic cytoskeleton.
Ryan D Mouery, Kimberly Lukasik, Carolyn Hsu, Thomas Bonacci, Derek L Bolhuis

Cell Rep· August 2024

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Mechanisms of USP18 deISGylation revealed by comparative analysis with its human paralog USP41.
Thomas Bonacci, Derek L Bolhuis, Nicholas G Brown, Michael J Emanuele

bioRxiv· May 2024

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APC/C and SCF Constitute a Reciprocal Feedback Circuit Controlling S-Phase Entry.
Rajarshi Choudhury, Thomas Bonacci, Anthony Arceci, Debojyoti Lahiri, Christine A Mills

Cell Rep· March 2024

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Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C).
Tatyana Bodrug, Kaeli A Welsh, Derek L Bolhuis, Ethan Paulаkonis, Raquel C Martinez-Chacin, Thomas Bonacci

Nat Struct Mol Biol· November 2023

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Proteomic Analysis Reveals a PLK1-Dependent G2/M Degradation Program and Links PKA-AKAP2 to Cell Cycle Control.
Ryan D Mouery, Carolyn Hsu, Thomas Bonacci, Derek L Bolhuis, Xianxi Wang

bioRxiv· October 2023

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Functional conservation and divergence of the helix-turn-helix motif of E2 ubiquitin-conjugating enzymes.
Kaeli A Welsh, Derek L Bolhuis, Anneroos E Nederstigt, Joshua Boyer, Brenda R S Temple, Thomas Bonacci

EMBO J· February 2022

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Dissenting degradation: Deubiquitinases in cell cycle and cancer.
Thomas Bonacci, Michael J Emanuele

Semin Cancer Biol· December 2020

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In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators.
Jennifer L Franks, Raquel C Martinez-Chacin, Xianxi Wang, Rochelle L Tiedemann, Thomas Bonacci

PLoS Biol· December 2020

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Ubiquitin chain-elongating enzyme UBE2S activates the RING E3 ligase APC/C for substrate priming.
Raquel C Martinez-Chacin, Tatyana Bodrug, Derek L Bolhuis, Katarzyna M Kedziora, Thomas Bonacci

Nat Struct Mol Biol· June 2020

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Impressionist portraits of mitotic exit: APC/C, K11-linked ubiquitin chains and Cezanne.
Thomas Bonacci, Michael J Emanuele

Cell Cycle· April 2020

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FOXM1 Deubiquitination by USP21 Regulates Cell Cycle Progression and Paclitaxel Sensitivity in Basal-like Breast Cancer.
Anthony Arceci, Thomas Bonacci, Xianxi Wang, Kyle Stewart, Jeffrey S Damrauer

Cell Rep· March 2019

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Who guards the guardian? Mechanisms that restrain APC/C during the cell cycle.
Jennifer Kernan, Thomas Bonacci, Michael J Emanuele

Biochim Biophys Acta Mol Cell Res· December 2018

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Cezanne/OTUD7B is a cell cycle-regulated deubiquitinase that antagonizes the degradation of APC/C substrates.
Thomas Bonacci, Aussie Suzuki, Gavin D Grant, Natalie Stanley, Jeanette G Cook

EMBO J· August 2018

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Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCF degron.
Kelsey M Gray, Kevin A Kaifer, David Baillat, Ying Wen, Thomas R Bonacci

Mol Biol Cell· January 2018

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The E3 Ubiquitin Ligase SCF(Cyclin F) Transmits AKT Signaling to the Cell-Cycle Machinery.
Rajarshi Choudhury, Thomas Bonacci, Xianxi Wang, Andrew Truong, Anthony Arceci

Cell Rep· September 2017

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Regulation of NUB1 Activity through Non-Proteolytic Mdm2-Mediated Ubiquitination.
Thomas Bonacci, Stéphane Audebert, Luc Camoin, Emilie Baudelet, Juan-Lucio Iovanna

PLoS One· August 2017

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Identification of a Drug Targeting an Intrinsically Disordered Protein Involved in Pancreatic Adenocarcinoma.
José L Neira, Jennifer Bintz, María Arruebo, Bruno Rizzuti, Thomas Bonacci

Sci Rep· January 2017

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APC/C and SCF(cyclin F) Constitute a Reciprocal Feedback Circuit Controlling S-Phase Entry.
Rajarshi Choudhury, Thomas Bonacci, Anthony Arceci, Debojyoti Lahiri, Christine A Mills

Cell Rep· September 2016

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Redox-sensitive TP53INP1 SUMOylation as an oxidative stress sensor to activate TP53.
Thomas Bonacci, Sylvain Peuget, Philippe Soubeyran, Juan Iovanna, Nelson J Dusetti

Mol Cell Oncol· June 2016

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Alterations of host cell ubiquitination machinery by pathogenic bacteria.
Jaafar Alomairi, Thomas Bonacci, Eric Ghigo, Philippe Soubeyran

Front Cell Infect Microbiol· September 2015

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