Publications by authors named "Thomas Bonfert"

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Prediction of Poly(A) Sites by Poly(A) Read Mapping.
Thomas Bonfert, Caroline C Friedel

PLoS One· August 2017

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p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses.
Sabine Hünten, Markus Kaller, Friedel Drepper, Silke Oeljeklaus, Thomas Bonfert

Mol Cell Proteomics· October 2015

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Widespread disruption of host transcription termination in HSV-1 infection.
Andrzej J Rutkowski, Florian Erhard, Anne L'Hernault, Thomas Bonfert, Markus Schilhabel

Nat Commun· May 2015

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ContextMap 2: fast and accurate context-based RNA-seq mapping.
Thomas Bonfert, Evelyn Kirner, Gergely Csaba, Ralf Zimmer, Caroline C Friedel

BMC Bioinformatics· April 2015

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Mining RNA-seq data for infections and contaminations.
Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C Friedel

PLoS One· May 2014

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Clonal expansion analysis of transposon insertions by high-throughput sequencing identifies candidate cancer genes in a PiggyBac mutagenesis screen.
Roland H Friedel, Caroline C Friedel, Thomas Bonfert, Ruijin Shi, Roland Rad

PLoS One· April 2014

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Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.
Lukas Windhager, Thomas Bonfert, Kaspar Burger, Zsolt Ruzsics, Stefan Krebs

Genome Res· October 2012

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Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection.
Lisa Marcinowski, Michael Lidschreiber, Lukas Windhager, Martina Rieder, Jens B Bosse, Thomas Bonfert

PLoS Pathog· September 2012

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A context-based approach to identify the most likely mapping for RNA-seq experiments.
Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C Friedel

BMC Bioinformatics· April 2012

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