Publications by authors named "Thomas D Goddard"

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Phenotypic landscape of an invasive fungal pathogen reveals its unique biology.
Michael J Boucher, Sanjita Banerjee, Meenakshi B Joshi, Angela L Wei, Matthew J Nalley, Thomas D Goddard

Cell· July 2025

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AlphaFold2-Guided Functional Screens Reveal a Conserved Antioxidant Protein at ER Membranes.
Zhijian Ji, Taruna Pandey, Henry de Belly, Jingxuan Yao, Bingying Wang, Thomas D Goddard

bioRxiv· March 2025

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Phenotypic landscape of a fungal meningitis pathogen reveals its unique biology.
Michael J Boucher, Sanjita Banerjee, Meenakshi B Joshi, Angela L Wei, Manning Y Huang, Thomas D Goddard

bioRxiv· October 2024

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IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods.
Brinda Vallat, Benjamin M Webb, John D Westbrook, Thomas D Goddard, Christian A Hanke

J Mol Biol· September 2024

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UCSF ChimeraX: Tools for structure building and analysis.
Elaine C Meng, Thomas D Goddard, Eric F Pettersen, Greg S Couch, Zach J Pearson

Protein Sci· November 2023

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UCSF ChimeraX: Structure visualization for researchers, educators, and developers.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Elaine C Meng, Gregory S Couch

Protein Sci· January 2021

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Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.
Helen M Berman, Paul D Adams, Alexandre A Bonvin, Stephen K Burley, Bridget Carragher, Thomas D Goddard

Structure· December 2019

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Molecular Visualization on the Holodeck.
Thomas D Goddard, Alan A Brilliant, Thomas L Skillman, Steven Vergenz, James Tyrwhitt-Drake

J Mol Biol· October 2018

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UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch

Protein Sci· January 2018

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Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes.
Lillian K Fritz-Laylin, Megan Riel-Mehan, Bi-Chang Chen, Samuel J Lord, Thomas D Goddard

Elife· September 2017

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Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins.
Samuel Hertig, Thomas D Goddard, Graham T Johnson, Thomas E Ferrin

Biophys J· May 2015

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UCSF Chimera, MODELLER, and IMP: an integrated modeling system.
Zheng Yang, Keren Lasker, Dina Schneidman-Duhovny, Ben Webb, Conrad C Huang, Thomas D Goddard

J Struct Biol· September 2012

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Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions.
Grigore D Pintilie, Junjie Zhang, Thomas D Goddard, Wah Chiu, David C Gossard

J Struct Biol· June 2010

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Visualization software for molecular assemblies.
Thomas D Goddard, Thomas E Ferrin

Curr Opin Struct Biol· October 2007

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Visualizing density maps with UCSF Chimera.
Thomas D Goddard, Conrad C Huang, Thomas E Ferrin

J Struct Biol· January 2007

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Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.
Thomas D Goddard, Conrad C Huang, Thomas E Ferrin

Structure· March 2005

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Long-range interphase chromosome organization in Drosophila: a study using color barcoded fluorescence in situ hybridization and structural clustering analysis.
Michael G Lowenstein, Thomas D Goddard, John W Sedat

Mol Biol Cell· December 2004

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UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt

J Comput Chem· October 2004

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