Publications by authors named "Thomas D Kocher"

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A Chromosome Inversion Creates a Supergene for Sex and Colour in Lake Malawi Cichlids.
Kristen A Behrens, Soumya Jailwala, Frances E Clark, Anne C Meyer, Nikesh M Kumar, Thomas D Kocher

Mol Ecol· October 2025

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Before the East African radiation: sex chromosome systems in basal haplotilapiine cichlids.
Kristen A Behrens, Zexuan Zhao, Michael R Kidd, Alfred Maluwa, Avner Cnaani, Thomas D Kocher

Genome Biol Evol· October 2025

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Mutation of mpv17 results in loss of iridophores due to mitochondrial dysfunction in tilapia.
Jia Xu, Peng Li, Mengmeng Xu, Chenxu Wang, Thomas D Kocher

J Hered· March 2025

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Large inversions in Lake Malawi cichlids are associated with habitat preference, lineage, and sex determination.
Nikesh M Kumar, Taylor L Cooper, Thomas D Kocher, J Todd Streelman, Patrick T McGrath

bioRxiv· March 2025

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Sex chromosome turnover and biodiversity in fishes.
Jingrong Wang, Wenjing Tao, Thomas D Kocher, Deshou Wang

J Genet Genomics· December 2024

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Yes, polygenic sex determination is a thing!
Thomas D Kocher, Richard P Meisel, Tony Gamble, Kristen A Behrens, William J Gammerdinger

Trends Genet· December 2024

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Genome assemblies for (Teleostei: Cichlidae) identify a novel candidate gene for vertebrate sex determination, RIN3.
Kristen A Behrens, Stephan Koblmüller, Thomas D Kocher

Front Genet· August 2024

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Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae).
Kristen A Behrens, Stephan Koblmueller, Thomas D Kocher

Genome Biol Evol· July 2024

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Disruption of Zar1 leads to arrested oogenesis by regulating polyadenylation via Cpeb1 in tilapia (Oreochromis niloticus).
Miao Yu, Shiyi Zhang, Zhisheng Ma, Jun Qiang, Jing Wei, Thomas D Kocher

Int J Biol Macromol· March 2024

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Dmrt1 is the only male pathway gene tested indispensable for sex determination and functional testis development in tilapia.
Shuangshuang Qi, Shengfei Dai, Xin Zhou, Xueyan Wei, Ping Chen, Thomas D Kocher

PLoS Genet· March 2024

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Turnover of sex chromosomes in the Lake Tanganyika cichlid tribe Tropheini (Teleostei: Cichlidae).
Kristen A Behrens, Holger Zimmermann, Radim Blažek, Martin Reichard, Stephan Koblmüller, Thomas D Kocher

Sci Rep· January 2024

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Correction to: 'Identification of sex chromosome and sex-determining gene of southern catfish based on XX, XY and YY genome sequencing' (2022) by Zheng .
Shuqing Zheng, Wenjing Tao, Haowen Yang, Thomas D Kocher, Zhijian Wang

Proc Biol Sci· January 2023

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Sex chromosomes in the tribe Cyprichromini (Teleostei: Cichlidae) of Lake Tanganyika.
Kristen A Behrens, Stephan Koblmüller, Thomas D Kocher

Sci Rep· October 2022

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CRISPR Knockouts of pmela and pmelb Engineered a Golden Tilapia by Regulating Relative Pigment Cell Abundance.
Chenxu Wang, Jia Xu, Thomas D Kocher, Minghui Li, Deshou Wang

J Hered· July 2022

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Polymorphism of Sex Determination Amongst Wild Populations Suggests its Rapid Turnover Within the Nile Tilapia Species.
Cécile Triay, Maxime Courcelle, Pierre Caminade, Etienne Bezault, Jean-François Baroiller, Thomas D Kocher

Front Genet· May 2022

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New Sex Chromosomes in Lake Victoria Cichlid Fishes (Cichlidae: Haplochromini).
Thomas D Kocher, Kristen A Behrens, Matthew A Conte, Mitsuto Aibara, Hillary D J Mrosso

Genes (Basel)· April 2022

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Identification of sex chromosome and sex-determining gene of southern catfish () based on XX, XY and YY genome sequencing.
Shuqing Zheng, Wenjing Tao, Haowen Yang, Thomas D Kocher, Zhijian Wang

Proc Biol Sci· March 2022

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A Chromosome-Level Genome Assembly of Mozambique Tilapia () Reveals the Structure of Sex Determining Regions.
Wenjing Tao, Jianmeng Cao, Hesheng Xiao, Xi Zhu, Junjian Dong, Thomas D Kocher

Front Genet· December 2021

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Nile Tilapia: A Model for Studying Teleost Color Patterns.
Chenxu Wang, Baoyue Lu, Tao Li, Guangyuan Liang, Mengmeng Xu, Thomas D Kocher

J Hered· August 2021

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Chromosome-level assembly of southern catfish (silurus meridionalis) provides insights into visual adaptation to nocturnal and benthic lifestyles.
Shuqing Zheng, Feng Shao, Wenjing Tao, Zhilong Liu, Juan Long, Thomas D Kocher

Mol Ecol Resour· July 2021

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Origin of a Giant Sex Chromosome.
Matthew A Conte, Frances E Clark, Reade B Roberts, Luohao Xu, Wenjing Tao, Thomas D Kocher

Mol Biol Evol· April 2021

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Identification, Expression and Evolution of Short-Chain Dehydrogenases/Reductases in Nile Tilapia ().
Shuai Zhang, Lang Xie, Shuqing Zheng, Baoyue Lu, Wenjing Tao, Thomas D Kocher

Int J Mol Sci· April 2021

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Network architecture and sex chromosome turnovers: Do epistatic interactions shape patterns of sex chromosome replacement?
Wenjing Tao, Matthew A Conte, Deshou Wang, Thomas D Kocher

Bioessays· March 2021

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Movement of transposable elements contributes to cichlid diversity.
Karen L Carleton, Matthew A Conte, Milan Malinsky, Sri Pratima Nandamuri, Benjamin A Sandkam, Thomas D Kocher

Mol Ecol· December 2020

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Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia.
Cécile Triay, Matthew A Conte, Jean-François Baroiller, Etienne Bezault, Frances E Clark, Thomas D Kocher

Genes (Basel)· August 2020

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