Publications by authors named "Thomas Hackl"

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Unravelling the Functional Diversity of Type III Polyketide Synthases in Fungi.
Nika Sokolova, Stepan S Denisov, Thomas Hackl, Kristina Haslinger

Angew Chem Int Ed Engl· October 2025

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De novo whole genome assembly of the globally invasive green shore crab Carcinus maenas (Linnaeus, 1758) via long-read Oxford Nanopore MinION sequencing.
Jolanda K Brons, Thomas Hackl, Riccardo Iacovelli, Kristina Haslinger, Sebastian Lequime

J Hered· October 2025

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aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types.
Shuangbin Xu, Qianwen Wang, Shaodi Wen, Junrui Li, Nan He, Thomas Hackl

Innovation (Camb)· September 2025

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detectEVE: Fast, Sensitive and Precise Detection of Endogenous Viral Elements in Genomic Data.
Nadja Brait, Thomas Hackl, Sebastian Lequime

Mol Ecol Resour· May 2025

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Distinct horizontal gene transfer potential of extracellular vesicles versus viral-like particles in marine habitats.
Steven J Biller, M Gray Ryan, Jasmine Li, Andrew Burger, John M Eppley, Thomas Hackl

Nat Commun· March 2025

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Widespread occurrence and relevance of phosphate storage in foraminifera.
Nicolaas Glock, Julien Richirt, Christian Woehle, Christopher Algar, Maria Armstrong, Thomas Hackl

Nature· February 2025

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Novel isolates expand the physiological diversity of and illuminate its macroevolution.
Jamie W Becker, Shaul Pollak, Jessie W Berta-Thompson, Kevin W Becker, Rogier Braakman, Thomas Hackl

mBio· November 2024

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Diverse rhizosphere-associated Pseudomonas genomes from along a Wadden Island salt marsh transition zone.
Siyu Mei, Miao Wang, Joana Falcão Salles, Thomas Hackl

Sci Data· October 2024

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Community context influences the conjugation efficiency of .
Misshelle Bustamante, Floor Koopman, Jesper Martens, Jolanda K Brons, Javier DelaFuente, Thomas Hackl

FEMS Microbes· July 2024

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Development of a genetic system for LR2-5, model host for haloarchaeal viruses.
Colin Tittes, Jeroen Nijland, Anna M C Schoentag, Thomas Hackl, Nadia Di Cianni

Appl Environ Microbiol· April 2024

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Endogenous virophages are active and mitigate giant virus infection in the marine protist .
Anna Koslová, Thomas Hackl, Felix Bade, Alexander Sanchez Kasikovic, Karina Barenhoff

Proc Natl Acad Sci U S A· March 2024

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A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data.
Nadja Brait, Thomas Hackl, Côme Morel, Antoni Exbrayat, Serafin Gutierrez

Virus Evol· December 2023

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From Nontargeted to Targeted Analysis: Feature Selection in the Differentiation of Truffle Species ( spp.) Using H NMR Spectroscopy and Support Vector Machine.
Thorsten Mix, Jasmin Janneschütz, Rami Ludwig, Julia Eichbaum, Markus Fischer, Thomas Hackl

J Agric Food Chem· November 2023

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Opening the Random Forest Black Box of H NMR Metabolomics Data by the Exploitation of Surrogate Variables.
Soeren Wenck, Thorsten Mix, Markus Fischer, Thomas Hackl, Stephan Seifert

Metabolites· October 2023

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Identification of metabolites from complex mixtures by 3D correlation of H NMR, MS and LC data using the SCORE-metabolite-ID approach.
Stephanie Watermann, Marie-Christin Bode, Thomas Hackl

Sci Rep· September 2023

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Food Monitoring: Limitations of Accelerated Storage to Predict Molecular Changes in Hazelnuts ( L.) under Realistic Conditions Using UPLC-ESI-IM-QTOF-MS.
Henri Loesel, Navid Shakiba, Soeren Wenck, Phat Le Tan, Tim-Oliver Karstens, Thomas Hackl

Metabolites· September 2023

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Genomic and Metabolomic Analysis of the Endophytic Fungus sp. VM-40 Isolated from the Medicinal Plant .
Ting He, Xiao Li, Riccardo Iacovelli, Thomas Hackl, Kristina Haslinger

J Fungi (Basel)· June 2023

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Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle.
Giovanna Capovilla, Rogier Braakman, Gregory P Fournier, Thomas Hackl, Julia Schwartzman

Proc Natl Acad Sci U S A· May 2023

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Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses.
Christopher Bellas, Thomas Hackl, Marie-Sophie Plakolb, Anna Koslová, Matthias G Fischer

Proc Natl Acad Sci U S A· April 2023

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Archaeal Host Cell Recognition and Viral Binding of HFTV1 to Its Host.
Sabine Schwarzer, Thomas Hackl, Hanna M Oksanen, Tessa E F Quax

mBio· February 2023

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Analysis of Hazelnuts ( L.) Stored for Extended Periods by H NMR Spectroscopy Monitoring Storage-Induced Changes in the Polar and Nonpolar Metabolome.
Navid Shakiba, Henri Lösel, Soeren Wenck, Leif Kumpmann, René Bachmann, Thomas Hackl

J Agric Food Chem· February 2023

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Draft genomes of three closely related low light-adapted Prochlorococcus.
Jessie W Berta-Thompson, Elaina Thomas, Andrés Cubillos-Ruiz, Thomas Hackl, Jamie W Becker

BMC Genom Data· February 2023

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Novel integrative elements and genomic plasticity in ocean ecosystems.
Thomas Hackl, Raphaël Laurenceau, Markus J Ankenbrand, Christina Bliem, Zev Cariani

Cell· January 2023

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Updated Virophage Taxonomy and Distinction from Polinton-like Viruses.
Simon Roux, Matthias G Fischer, Thomas Hackl, Laura A Katz, Frederik Schulz

Biomolecules· January 2023

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Novel and unusual genes for nitrogen and metal cycling in Planctomycetota- and KSB1-affiliated metagenome-assembled genomes reconstructed from a marine subsea tunnel.
Carolina Suarez, Thomas Hackl, Britt-Marie Wilen, Frank Persson, Per Hagelia

FEMS Microbiol Lett· January 2023

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