Publications by authors named "Thomas Zichner"

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Coral: a web-based visual analysis tool for creating and characterizing cohorts.
Patrick Adelberger, Klaus Eckelt, Markus J Bauer, Marc Streit, Christian Haslinger, Thomas Zichner

Bioinformatics· December 2021

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PD-1 and LAG-3 Dominate Checkpoint Receptor-Mediated T-cell Inhibition in Renal Cell Carcinoma.
Henning Zelba, Jens Bedke, Jörg Hennenlotter, Sven Mostböck, Markus Zettl, Thomas Zichner

Cancer Immunol Res· November 2019

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Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples.
Marc Streit, Samuel Gratzl, Holger Stitz, Andreas Wernitznig, Thomas Zichner

Bioinformatics· September 2019

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SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines.
Katharina Ehrenhöfer-Wölfer, Teresa Puchner, Cornelia Schwarz, Janine Rippka, Silvia Blaha-Ostermann, Thomas Zichner

Sci Rep· August 2019

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KnowledgePearls: Provenance-Based Visualization Retrieval.
Holger Stitz, Samuel Gratzl, Harald Piringer, Thomas Zichner, Marc Streit

IEEE Trans Vis Comput Graph· August 2018

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Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.
Sebastian M Waszak, Paul A Northcott, Ivo Buchhalter, Giles W Robinson, Christian Sutter, Thomas Zichner

Lancet Oncol· June 2018

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The whole-genome landscape of medulloblastoma subtypes.
Paul A Northcott, Ivo Buchhalter, A Sorana Morrissy, Volker Hovestadt, Joachim Weischenfeldt, Thomas Zichner

Nature· July 2017

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Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking.
Joachim Weischenfeldt, Taronish Dubash, Alexandros P Drainas, Balca R Mardin, Yuanyuan Chen, Thomas Zichner

Nat Genet· January 2017

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Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.
Enrico Cannavò, Pierre Khoueiry, David A Garfield, Paul Geeleher, Thomas Zichner

Curr Biol· January 2016

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An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, Thomas Zichner

Nature· October 2015

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Genomics and drug profiling of fatal TCF3-HLF-positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options.
Ute Fischer, Michael Forster, Anna Rinaldi, Thomas Risch, Stéphanie Sungalee, Thomas Zichner

Nat Genet· September 2015

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Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines.
Wen Huang, Andreas Massouras, Yutaka Inoue, Jason Peiffer, Miquel Ràmia, Thomas Zichner

Genome Res· July 2014

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Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma.
Paul A Northcott, Catherine Lee, Thomas Zichner, Adrian M Stütz, Serap Erkek

Nature· July 2014

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The genomic and transcriptomic landscape of a HeLa cell line.
Jonathan J M Landry, Paul Theodor Pyl, Tobias Rausch, Thomas Zichner, Manu M Tekkedil

G3 (Bethesda)· August 2013

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Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma.
David T W Jones, Barbara Hutter, Natalie Jäger, Andrey Korshunov, Marcel Kool, Thomas Zichner

Nat Genet· August 2013

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Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing.
Thomas Zichner, David A Garfield, Tobias Rausch, Adrian M Stütz, Enrico Cannavó

Genome Res· March 2013

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Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer.
Joachim Weischenfeldt, Ronald Simon, Lars Feuerbach, Karin Schlangen, Dieter Weichenhan, Thomas Zichner

Cancer Cell· February 2013

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DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Tobias Rausch, Thomas Zichner, Andreas Schlattl, Adrian M Stütz, Vladimir Benes

Bioinformatics· September 2012

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Subgroup-specific structural variation across 1,000 medulloblastoma genomes.
Paul A Northcott, David J H Shih, John Peacock, Livia Garzia, A Sorana Morrissy, Thomas Zichner

Nature· August 2012

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Dissecting the genomic complexity underlying medulloblastoma.
David T W Jones, Natalie Jäger, Marcel Kool, Thomas Zichner, Barbara Hutter

Nature· August 2012

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Identifying the unknowns by aligning fragmentation trees.
Florian Rasche, Kerstin Scheubert, Franziska Hufsky, Thomas Zichner, Marco Kai

Anal Chem· April 2012

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Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner

Cell· January 2012

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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity.
Sebastian M Waszak, Yehudit Hasin, Thomas Zichner, Tsviya Olender, Ifat Keydar

PLoS Comput Biol· November 2010

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Faspad: fast signaling pathway detection.
Falk Hüffner, Sebastian Wernicke, Thomas Zichner

Bioinformatics· July 2007

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