Publications by authors named "Tianyin Zhou"

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Analysis of Genetic Variation Indicates DNA Shape Involvement in Purifying Selection.
Xiaofei Wang, Tianyin Zhou, Zeba Wunderlich, Matthew T Maurano, Angela H DePace

Mol Biol Evol· August 2018

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DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Lin Yang, Renato Paro

Bioinformatics· April 2016

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Quantitative modeling of transcription factor binding specificities using DNA shape.
Tianyin Zhou, Ning Shen, Lin Yang, Namiko Abe, John Horton

Proc Natl Acad Sci U S A· April 2015

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Deconvolving the recognition of DNA shape from sequence.
Namiko Abe, Iris Dror, Lin Yang, Matthew Slattery, Tianyin Zhou

Cell· April 2015

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Evolving insights on how cytosine methylation affects protein-DNA binding.
Ana Carolina Dantas Machado, Tianyin Zhou, Satyanarayan Rao, Pragya Goel, Chaitanya Rastogi

Brief Funct Genomics· January 2015

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GBshape: a genome browser database for DNA shape annotations.
Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J Main, Stephen C J Parker

Nucleic Acids Res· January 2015

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Absence of a simple code: how transcription factors read the genome.
Matthew Slattery, Tianyin Zhou, Lin Yang, Ana Carolina Dantas Machado, Raluca Gordân

Trends Biochem Sci· September 2014

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Covariation between homeodomain transcription factors and the shape of their DNA binding sites.
Iris Dror, Tianyin Zhou, Yael Mandel-Gutfreund, Remo Rohs

Nucleic Acids Res· January 2014

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TFBSshape: a motif database for DNA shape features of transcription factor binding sites.
Lin Yang, Tianyin Zhou, Iris Dror, Anthony Mathelier, Wyeth W Wasserman

Nucleic Acids Res· January 2014

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DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.
Tianyin Zhou, Lin Yang, Yan Lu, Iris Dror, Ana Carolina Dantas Machado

Nucleic Acids Res· July 2013

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Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape.
Raluca Gordân, Ning Shen, Iris Dror, Tianyin Zhou, John Horton

Cell Rep· April 2013

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Probing DNA shape and methylation state on a genomic scale with DNase I.
Allan Lazarovici, Tianyin Zhou, Anthony Shafer, Ana Carolina Dantas Machado, Todd R Riley

Proc Natl Acad Sci U S A· April 2013

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Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.
Matthew Slattery, Todd Riley, Peng Liu, Namiko Abe, Pilar Gomez-Alcala, Tianyin Zhou

Cell· December 2011

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Genes under positive selection in Mycobacterium tuberculosis.
Yuan Zhang, Hong Zhang, Tianyin Zhou, Yang Zhong, Qi Jin

Comput Biol Chem· October 2011

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