Publications by authors named "Tiina M Pakula"

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Transcriptomic and metabolic changes in Trichoderma reesei caused by mutation in xylanase regulator 1 (xyr1).
Emmi Sveholm, Hans Mattila, Nina Aro, Mari Valkonen, Tanja Paasela, Tiina M Pakula

Biotechnol Biofuels Bioprod· July 2024

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Whole-genome metabolic model of built by comparative reconstruction.
Sandra Castillo, Dorothee Barth, Mikko Arvas, Tiina M Pakula, Esa Pitkänen

Biotechnol Biofuels· November 2016

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Genome wide analysis of protein production load in Trichoderma reesei.
Tiina M Pakula, Heli Nygren, Dorothee Barth, Markus Heinonen, Sandra Castillo

Biotechnol Biofuels· June 2016

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Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production.
Elizabeth V Nguyen, Susumu Y Imanishi, Pekka Haapaniemi, Avinash Yadav, Markku Saloheimo, Tiina M Pakula

J Proteome Res· February 2016

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The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei.
Mari Häkkinen, Dhinakaran Sivasiddarthan, Nina Aro, Markku Saloheimo, Tiina M Pakula

Microb Cell Fact· April 2015

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Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production.
Mari Häkkinen, Mari J Valkonen, Ann Westerholm-Parvinen, Nina Aro, Mikko Arvas, Tiina M Pakula

Biotechnol Biofuels· January 2014

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Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates.
Mari Häkkinen, Mikko Arvas, Merja Oja, Nina Aro, Merja Penttilä, Tiina M Pakula

Microb Cell Fact· October 2012

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The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina).
Markku Saloheimo, Tiina M Pakula

Microbiology (Reading)· January 2012

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Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag.
Anna Collén, Markku Saloheimo, Michael Bailey, Merja Penttilä, Tiina M Pakula

Biotechnol Bioeng· February 2005

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The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei.
Tiina M Pakula, Katri Salonen, Jaana Uusitalo, Merja Penttilä

Microbiology (Reading)· January 2005

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The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei. Evidence for down-regulation of genes that encode secreted proteins in the stressed cells.
Tiina M Pakula, Marjukka Laxell, Anne Huuskonen, Jaana Uusitalo, Markku Saloheimo

J Biol Chem· November 2003

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Monitoring the kinetics of glycoprotein synthesis and secretion in the filamentous fungus Trichoderma reesei: cellobiohydrolase I (CBHI) as a model protein.
Tiina M Pakula, Jaana Uusitalo, Markku Saloheimo, Katri Salonen, Robert J Aarts

Microbiology (Reading)· January 2000

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