Publications by authors named "Timofey Skvortsov"

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Potassium iodide enhances the antimicrobial activity of plasma-activated water.
Laura A McClenaghan, Thomas P Thompson, Akash Shambharkar, Ross M Duncan, Paula Bourke, Timofey Skvortsov

Biofilm· December 2025

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ProFlex as a linguistic bridge for decoding protein dynamics in normal mode analysis.
Damian J Magill, Timofey A Skvortsov

Nat Commun· October 2025

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Combining analysis of individual and wastewater whole genome sequencing improves SARS-CoV-2 surveillance.
Evan P Troendle, Andrew J Lee, Marina I Reyne, Danielle M Allen, Stephen J Bridgett, Timofey Skvortsov

Water Res· September 2025

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Plasma activated water pre-treatment substantially enhances phage activity against biofilms.
Akash Shambharkar, Thomas P Thompson, Laura A McClenaghan, Paula Bourke, Brendan F Gilmore, Timofey Skvortsov

Biofilm· December 2024

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SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics.
Alan M Rice, Evan P Troendle, Stephen J Bridgett, Behnam Firoozi Nejad, Jennifer M McKinley, Timofey Skvortsov

Genome Med· December 2024

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Identification and characterisation of two functional antibiotic MATE efflux pumps in the archaeon Halorubrum amylolyticum.
Asma A Fakhoury, Thomas P Thompson, Khondaker Miraz Rahman, Julianne Megaw, Matthew I McAteer, Timofey Skvortsov

NPJ Antimicrob Resist· August 2024

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A novel bioinformatic method for the identification of antimicrobial peptides in metagenomes.
Julianne Megaw, Timofey Skvortsov, Giulia Gori, Aliyu I Dabai, Brendan F Gilmore

J Appl Microbiol· March 2024

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Cold atmospheric pressure plasma-antibiotic synergy in biofilms is mediated via oxidative stress response.
Jordanne-Amee Maybin, Thomas P Thompson, Padrig B Flynn, Timofey Skvortsov, Noreen J Hickok

Biofilm· December 2023

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DePolymerase Predictor (DePP): a machine learning tool for the targeted identification of phage depolymerases.
Damian J Magill, Timofey A Skvortsov

BMC Bioinformatics· May 2023

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Mini-XT, a miniaturized tagmentation-based protocol for efficient sequencing of SARS-CoV-2.
Marc Fuchs, Clara Radulescu, Miao Tang, Arun Mahesh, Deborah Lavin, Timofey Skvortsov

J Transl Med· March 2022

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Phylogenetic systematics of and genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms.
Sara E Pidcock, Timofey Skvortsov, Fernanda G Santos, Stephen J Courtney, Karen Sui-Ting

Microb Genom· October 2021

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Novel Phage-Derived Depolymerase with Activity against Biofilms.
Cormac J Rice, Stephen A Kelly, Seamus C O'Brien, Erinn M Melaugh, Jan C B Ganacias, Timofey Skvortsov

Microorganisms· October 2021

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Small RNA F6 Provides Entry into Dormancy.
Artem Grigorov, Oksana Bychenko, Elena G Salina, Yulia Skvortsova, Arina Mazurova, Timofey Skvortsov

Int J Mol Sci· October 2021

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Microbiology of a NaCl stalactite 'salticle' in Triassic halite.
Thomas P Thompson, Stephen A Kelly, Timofey Skvortsov, Gill Plunkett, Alastair Ruffell

Environ Microbiol· July 2021

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Engineering Peptides to Catalyze and Control Stabilization of Gas Hydrates: Learning From Nature.
Mohammad Reza Ghaani, Christopher C R Allen, Timofey Skvortsov, Niall J English

J Phys Chem Lett· July 2020

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Profiling the microbial community of a Triassic halite deposit in Northern Ireland: an environment with significant potential for biodiscovery.
Julianne Megaw, Stephen A Kelly, Thomas P Thompson, Timofey Skvortsov, Brendan F Gilmore

FEMS Microbiol Lett· November 2019

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Characterisation of a solvent-tolerant haloarchaeal (R)-selective transaminase isolated from a Triassic period salt mine.
Stephen A Kelly, Damian J Magill, Julianne Megaw, Timofey Skvortsov, Thorsten Allers

Appl Microbiol Biotechnol· July 2019

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Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols.
Jonathan M Young, Timofey Skvortsov, Brian P Kelleher, William C Mahaney, Peeter Somelar

Sci Total Environ· March 2019

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Characterization of a novel ω-transaminase from a Triassic salt mine metagenome.
Stephen A Kelly, Timofey Skvortsov, Damian Magill, Derek J Quinn, John W McGrath

Biochem Biophys Res Commun· September 2018

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Temporal dynamics of uncultured viruses: a new dimension in viral diversity.
Ksenia Arkhipova, Timofey Skvortsov, John P Quinn, John W McGrath, Christopher Cr Allen

ISME J· January 2018

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Draft Genome Sequence of the Predatory Marine Bacterium sp. Strain JY17.
Jonathan M Young, Timofey Skvortsov, Ksenia Arkhipova, Christopher C R Allen

Genome Announc· January 2018

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Draft Genome Sequences of UV4 and UV4/95, Toluene Dioxygenase-Expressing Producers of -1,2-Dihydrodiols.
Timofey Skvortsov, Patrick Hoering, Ksenia Arkhipova, Roger C Whitehead, Derek R Boyd

Genome Announc· January 2018

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Draft Genome Sequence of sp. Strain NCIMB 12038, a Naphthalene-Degrading Bacterium.
Shamsudeen U Dandare, Timofey Skvortsov, Ksenia Arkhipova, Christopher C R Allen

Genome Announc· January 2018

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Spatial requirement for PAMO for transformation of non-native linear substrates.
Alexandra T P Carvalho, Daniel F A R Dourado, Timofey Skvortsov, Miguel de Abreu, Lyndsey J Ferguson

Phys Chem Chem Phys· January 2018

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Catalytic mechanism of phenylacetone monooxygenases for non-native linear substrates.
Alexandra T P Carvalho, Daniel F A R Dourado, Timofey Skvortsov, Miguel de Abreu, Lyndsey J Ferguson

Phys Chem Chem Phys· October 2017

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