Publications by authors named "Timothy D Leeds"

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The Impact of Exposure Dosage and Host Genetics on the Shedding Kinetics of Flavobacterium psychrophilum in Rainbow Trout.
Darbi R Jones, Jeremy Everson, Timothy D Leeds, Gregory D Wiens, Andrew R Wargo

J Fish Dis· August 2025

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Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout.
Sixin Liu, Kyle E Martin, Warren M Snelling, Roseanna Long, Timothy D Leeds

G3 (Bethesda)· September 2024

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Plasma proteomic profiling of bacterial cold water disease-resistant and -susceptible rainbow trout lines and biomarker discovery.
Gregory D Wiens, David P Marancik, Christopher C Chadwick, Keira Osbourn, Ross M Reid, Timothy D Leeds

Front Immunol· November 2023

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Identification of Haplotypes Associated With Resistance to Bacterial Cold Water Disease in Rainbow Trout Using Whole-Genome Resequencing.
Sixin Liu, Kyle E Martin, Guangtu Gao, Roseanna Long, Jason P Evenhuis, Timothy D Leeds

Front Genet· June 2022

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Aquaculture Reuse Water, Genetic Line, and Vaccination Affect Rainbow Trout () Disease Susceptibility and Infection Dynamics.
Jeremy L Everson, Darbi R Jones, Amy K Taylor, Barb J Rutan, Timothy D Leeds

Front Immunol· December 2021

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Comparisons among rainbow trout, Oncorhynchus mykiss, populations of maternal transcript profile associated with egg viability.
Gregory M Weber, Jill Birkett, Kyle Martin, Doug Dixon, Guangtu Gao, Timothy D Leeds

BMC Genomics· June 2021

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Identification of High-Confidence Structural Variants in Domesticated Rainbow Trout Using Whole-Genome Sequencing.
Sixin Liu, Guangtu Gao, Ryan M Layer, Gary H Thorgaard, Gregory D Wiens, Timothy D Leeds

Front Genet· February 2021

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Transcriptomic Response to Selective Breeding for Fast Growth in Rainbow Trout (Oncorhynchus mykiss).
Beth M Cleveland, Guangtu Gao, Timothy D Leeds

Mar Biotechnol (NY)· August 2020

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Variance and covariance estimates for resistance to bacterial cold water disease and columnaris disease in two rainbow trout breeding populations1.
Rafael M O Silva, Jason P Evenhuis, Roger L Vallejo, Shogo Tsuruta, Gregory D Wiens, Timothy D Leeds

J Anim Sci· March 2019

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Effects of rearing triplet lambs on ewe productivity, lamb survival and performance, and future ewe performance.
David R Notter, Michelle R Mousel, Timothy D Leeds, Gregory S Lewis, J Bret Taylor

J Anim Sci· December 2018

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Genome-Wide Association Analysis With a 50K Transcribed Gene SNP-Chip Identifies QTL Affecting Muscle Yield in Rainbow Trout.
Mohamed Salem, Rafet Al-Tobasei, Ali Ali, Daniela Lourenco, Guangtu Gao, Timothy D Leeds

Front Genet· September 2018

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Integrated analysis of lncRNA and mRNA expression in rainbow trout families showing variation in muscle growth and fillet quality traits.
Ali Ali, Rafet Al-Tobasei, Brett Kenney, Timothy D Leeds, Mohamed Salem

Sci Rep· August 2018

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Retrospective Evaluation of Marker-Assisted Selection for Resistance to Bacterial Cold Water Disease in Three Generations of a Commercial Rainbow Trout Breeding Population.
Sixin Liu, Roger L Vallejo, Jason P Evenhuis, Kyle E Martin, Alastair Hamilton, Timothy D Leeds

Front Genet· August 2018

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Accurate genomic predictions for BCWD resistance in rainbow trout are achieved using low-density SNP panels: Evidence that long-range LD is a major contributing factor.
Roger L Vallejo, Rafael M O Silva, Jason P Evenhuis, Guangtu Gao, Sixin Liu, Timothy D Leeds

J Anim Breed Genet· June 2018

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Similar Genetic Architecture with Shared and Unique Quantitative Trait Loci for Bacterial Cold Water Disease Resistance in Two Rainbow Trout Breeding Populations.
Roger L Vallejo, Sixin Liu, Guangtu Gao, Breno O Fragomeni, Alvaro G Hernandez, Timothy D Leeds

Front Genet· October 2017

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Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout.
Rafet Al-Tobasei, Ali Ali, Timothy D Leeds, Sixin Liu, Yniv Palti

BMC Genomics· August 2017

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RNA-Seq reveals MicroRNA expression signature and genetic polymorphism associated with growth and muscle quality traits in rainbow trout.
Bam Dev Paneru, Rafet Al-Tobasei, Brett Kenney, Timothy D Leeds, Mohamed Salem

Sci Rep· August 2017

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Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture.
Roger L Vallejo, Timothy D Leeds, Guangtu Gao, James E Parsons, Kyle E Martin

Genet Sel Evol· February 2017

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Genome-Wide Association Study for Identifying Loci that Affect Fillet Yield, Carcass, and Body Weight Traits in Rainbow Trout ().
Dianelys Gonzalez-Pena, Guangtu Gao, Matthew Baranski, Thomas Moen, Beth M Cleveland, Timothy D Leeds

Front Genet· November 2016

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Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models.
Roger L Vallejo, Timothy D Leeds, Breno O Fragomeni, Guangtu Gao, Alvaro G Hernandez

Front Genet· June 2016

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Biochemical reference intervals and pathophysiological changes in Flavobacterium psychrophilum-resistant and -susceptible rainbow trout lines.
David P Marancik, Melinda S Camus, Alvin C Camus, Timothy D Leeds, Gregory M Weber

Dis Aquat Organ· October 2014

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Histopathologic Changes in Disease-Resistant-Line and Disease-Susceptible-Line Juvenile Rainbow Trout Experimentally Infected with Flavobacterium psychrophilum.
David P Marancik, Timothy D Leeds, Gregory D Wiens

J Aquat Anim Health· September 2014

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Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: identification of QTL on chromosome Omy19.
Gregory D Wiens, Roger L Vallejo, Timothy D Leeds, Yniv Palti, Sima Hadidi

PLoS One· June 2014

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Acute mortality, bacterial load, and pathology of select lines of adult rainbow trout challenged with Weissella sp. NC36.
David P Marancik, Timothy J Welch, Timothy D Leeds, Gregory D Wiens

J Aquat Anim Health· December 2013

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RNA-Seq identifies SNP markers for growth traits in rainbow trout.
Mohamed Salem, Roger L Vallejo, Timothy D Leeds, Yniv Palti, Sixin Liu

PLoS One· September 2012

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