Publications by authors named "Timothy D Read"

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Methicillin-Resistant Staphylococcus aureus Bacteremia Relapses Show Diverse Genomic Profiles but Convergence in Bacteremia-Associated Genes.
Brooke M Talbot, Natasia F Jacko, Katrina S Hofstetter, Tara Alahakoon, Kevin Bouiller, Timothy D Read

J Infect Dis· December 2025

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Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections.
Sankhya Bommana, Olusola Olagoke, Yi-Juan Hu, Ruohong Wang, Mike Kama, Timothy D Read

NPJ Biofilms Microbiomes· December 2025

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Using wastewater surveillance to investigate community-level differences in antibacterial resistance in a major urban center, USA.
Cameron Goetgeluck, Oluwatosin Olojo, Stephen P Hilton, Orlando Sablon, Lorenzo Freeman, Timothy D Read

Appl Environ Microbiol· November 2025

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Staphylococcus aureus induces Gasdermin A-dependent keratinocyte pyroptosis.
Doris L LaRock, Jacob D Sherman, Claire Qu, William Ngai, Timothy D Read

Nat Commun· November 2025

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Transition of tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years.
Megan A Phillips, Robert A Petit, Daniel B Weissman, Timothy D Read

bioRxiv· September 2025

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A fluorescence-based protocol to monitor bacterial antagonism.
Justin M Luu, Cristian V Crisan, Morgan L Pettis, Anayancy Ramos Facio, Timothy D Read

Microbiol Spectr· August 2025

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Integrative analysis of microbial 16S gene and shotgun metagenomic sequencing data improves statistical efficiency in testing differential abundance.
Ye Yue, Yicong Mao, Timothy D Read, Veronika Fedirko, Glen A Satten

J Am Stat Assoc· August 2025

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Host and antibiotic jointly select for greater virulence in .
Michelle Su, Kim L Hoang, McKenna Penley, Michelle H Davis, Jennifer D Gresham, Timothy D Read

bioRxiv· April 2025

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Whole-genome automated assembly pipeline for strains from reference, and clinical samples using the integrated CtGAP pipeline.
Olusola Olagoke, Ammar Aziz, Lucile H Zhu, Timothy D Read, Deborah Dean

NAR Genom Bioinform· March 2025

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Comparative genomic analysis of emerging non-typeable (NTHi) causing emerging septic arthritis in Atlanta.
Brianna J Bixler, Charlotte J Royer, Robert A Petit Iii, Abraham G Moller, Samantha Sefton, Timothy D Read

PeerJ· March 2025

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Genomic investigation of MRSA bacteremia relapse reveals diverse genomic profiles but convergence in bacteremia-associated genes.
Brooke M Talbot, Natasia F Jacko, Katrina S Hofstetter, Tara Alahakoon, Kevin Bouiller, Timothy D Read

medRxiv· March 2025

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Intraspecific Diversity of Populations Isolated from Cystic Fibrosis Respiratory Infections.
Ashley M Alexander, Hui Qi Loo, Lauren Askew, Vishnu Raghuram, Timothy D Read

bioRxiv· November 2024

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Defense Heterogeneity in Host Populations Gives Rise to Pathogen Diversity.
Kim L Hoang, Timothy D Read, Kayla C King

Am Nat· October 2024

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Erratum for Balthazar et al., "A laboratory-based predictive pathway for the development of e high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase".
Jacqueline T Balthazar, Daniel Golparian, Magnus Unemo, Timothy D Read, Miriam Grosse

Microbiol Spectr· August 2024

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Metagenome-wide characterization of shared antimicrobial resistance genes in sympatric people and lemurs in rural Madagascar.
Brooke M Talbot, Julie A Clennon, Miarintsoa Fara Nantenaina Rakotoarison, Lydia Rautman, Sarah Durry, Timothy D Read

PeerJ· August 2024

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Genomic insights into the evolution of secondary metabolism of and its allies, specialized fungal symbionts of fungus-farming ants.
Aileen Berasategui, Hassan Salem, Abraham G Moller, Yuliana Christopher, Quimi Vidaurre Montoya, Timothy D Read

mSystems· July 2024

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Average nucleotide identity-based strain grouping allows identification of strain-specific genes in the pangenome.
Vishnu Raghuram, Robert A Petit, Zach Karol, Rohan Mehta, Daniel B Weissman, Timothy D Read

mSystems· July 2024

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Chlamydia suis undergoes interclade recombination promoting Tet-island exchange.
Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D Read, Hanna Marti

BMC Genomics· July 2024

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A laboratory-based predictive pathway for the development of high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase.
Jacqueline T Balthazar, Daniel Golparian, Magnus Unemo, Timothy D Read, Miriam Grosse

Microbiol Spectr· June 2024

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Strain Differences in Bloodstream and Skin Infection: Methicillin-Resistant Isolated in 2018-2021 in a Single Health System.
Katrina S Hofstetter, Natasia F Jacko, Margot J Shumaker, Brooke M Talbot, Robert A Petit, Timothy D Read

Open Forum Infect Dis· June 2024

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Corrigendum: Patterns of within-host spread of between vagina, endocervix and rectum revealed by comparative genomic analysis.
Sandeep J Joseph, Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D Read

Front Microbiol· June 2024

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Experimentally evolved shows increased survival in the presence of by acquiring mutations in the amino acid transporter, GltT.
Ashley M Alexander, Justin M Luu, Vishnu Raghuram, Giulia Bottacin, Simon van Vliet, Timothy D Read

Microbiology (Reading)· March 2024

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Incomplete immunity in a natural animal-microbiota interaction selects for higher pathogen virulence.
Kim L Hoang, Timothy D Read, Kayla C King

Curr Biol· March 2024

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Factors associated with foreign body infection in methicillin-resistant bacteremia.
Kevin Bouiller, Natasia F Jacko, Margot J Shumaker, Brooke M Talbot, Timothy D Read

Front Immunol· March 2024

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The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005-2021.
Ahmed Babiker, Geeta Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Timothy D Read

Open Forum Infect Dis· March 2024

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