Publications by authors named "Timothy Dallman"

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Predicting clinical outcome of O157:H7 infections using explainable machine learning.
Julian A Paganini, Suniya Khatun, Sean McAteer, Lauren Cowley, David R Greig, Timothy J Dallman

Microb Genom· December 2025

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Attributable sources of the five most prevalent non-typhoidal Salmonella serovars across ten European countries.
Gijs Teunis, Timothy J Dallman, Magdalena Zając, Magdalena Skarżyńska, Liljana Petrovska

J Infect· November 2025

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Heterogeneous typhi transmission within a household: genomic insights from a chronic carrier.
Rushana Hussain, George Stenhouse, Amina Ismail Ahmed, Timothy J Dallman, Satheesh Nair

J Med Microbiol· September 2025

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Detecting wing fractures in chickens using deep learning, photographs and computed tomography scanning.
Kacper Libera, Dirk Schut, Effrosyni Kritsi, Louis van Steijn, Timothy Dallman

Poult Sci· August 2025

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Genomic epidemiology of Enteritidis human infections in the Netherlands, 2019 to 2023.
Linda E Chanamé Pinedo, Eelco Franz, Timothy J Dallman, Claudia E Coipan, Roxanne Wolthuis

Microb Genom· April 2025

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Source attribution of Listeria monocytogenes in the Netherlands.
Lapo Mughini-Gras, Julian A Paganini, Ruoshui Guo, Claudia E Coipan, Ingrid H M Friesema, Timothy J Dallman

Int J Food Microbiol· January 2025

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A One Health Perspective on Salmonella enterica Serovar Infantis, an Emerging Human Multidrug-Resistant Pathogen.
Jennifer Mattock, Marie Anne Chattaway, Hassan Hartman, Timothy J Dallman, Anthony M Smith

Emerg Infect Dis· April 2024

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Inspection of chicken wings and legs for animal welfare monitoring using X-ray computed tomography, visual examination, and histopathology.
Kacper Libera, Roozbeh Valadian, Patiharn Vararattanavech, Sri Nithya Dasari, Timothy J Dallman

Poult Sci· March 2024

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Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing.
David R Greig, Vivienne Do Nascimento, David L Gally, Saheer E Gharbia, Timothy J Dallman

Sci Rep· March 2024

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Development and validation of a random forest algorithm for source attribution of animal and human Typhimurium and monophasic variants of Typhimurium isolates in England and Wales utilising whole genome sequencing data.
Jaromir Guzinski, Yue Tang, Marie Anne Chattaway, Timothy J Dallman, Liljana Petrovska

Front Microbiol· March 2024

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Analysis of O157 strains in cattle and humans between Scotland and England & Wales: implications for human health.
Margo Chase-Topping, Timothy J Dallman, Lesley Allison, Nadejda Lupolova, Louise Matthews

Microb Genom· September 2023

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Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli.
Timothy J Dallman, Saskia Neuert, Cristina Fernandez Turienzo, Michelle Berin, Emily Richardson

Microbiol Spectr· August 2023

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Rapid geographical source attribution of serovar Enteritidis genomes using hierarchical machine learning.
Sion C Bayliss, Rebecca K Locke, Claire Jenkins, Marie Anne Chattaway, Timothy J Dallman

Elife· April 2023

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Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Typhimurium ST34 pandemic strain.
Oliver J Charity, Luke Acton, Matt Bawn, Eleonora Tassinari, Gaёtan Thilliez, Timothy J Dallman

Microb Genom· November 2022

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Identification of domestic reservoirs and common exposures in an emerging lineage of Shiga toxin-producing Escherichia coli O157:H7 in England: a genomic epidemiological analysis.
Timothy J Dallman, Katri Jalava, Neville Q Verlander, David Gally, Claire Jenkins

Lancet Microbe· August 2022

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A case report of serovar Corvallis from environmental isolates from Cambodia and clinical isolates in the UK.
Carla L Schwan, Timothy J Dallman, Peter W Cook, Jessie Vipham

Access Microbiol· January 2022

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Emergence and global spread of main clinical clonal complex.
Alexandra Moura, Noémie Lefrancq, Thierry Wirth, Alexandre Leclercq, Vítor Borges, Timothy J Dallman

Sci Adv· December 2021

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Linkage of Whole Genome Sequencing, Epidemiological, and Clinical Data to Understand the Genetic Diversity and Clinical Outcomes of Shigella flexneri among Men Who Have Sex with Men in England.
Holly D Mitchell, Nicholas R Thomson, Claire Jenkins, Timothy J Dallman, Anaïs Painset

Microbiol Spectr· December 2021

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Epidemiology and genomic analysis of Shiga toxin-producing clonal complex 165 in the UK.
Ella V Rodwell, Bhavita Vishram, Robert Smith, Lynda Browning, Alison Smith-Palmer, Timothy J Dallman

J Med Microbiol· December 2021

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Genome structural variation in O157:H7.
Stephen F Fitzgerald, Nadejda Lupolova, Sharif Shaaban, Timothy J Dallman, David Greig

Microb Genom· November 2021

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Salmonella Paratyphi B; Public Health and Parental Choice: When to Treat Asymptomatic Carriers of Infection?
Katy Fidler, Julia Dudley, Rachel Cloke, Margot Nicholls, David R Greig, Timothy J Dallman

Pediatr Infect Dis J· October 2021

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Characterization of a pESI-like plasmid and analysis of multidrug-resistant Infantis isolates in England and Wales.
Winnie W Y Lee, Jennifer Mattock, David R Greig, Gemma C Langridge, David Baker, Timothy J Dallman

Microb Genom· October 2021

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Emergence of novel strains of associated with sexual transmission in adult men in England, 2019-2020.
Timothy J Dallman, Hannah Charles, Mateo Prochazka, Katy Sinka, Gwenda Hughes

J Med Microbiol· October 2021

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Development and evaluation of an outbreak surveillance system integrating whole genome sequencing data for non-typhoidal in London and South East of England, 2016-17.
Karthik Paranthaman, Piers Mook, Daniele Curtis, Edward-Wynne Evans, Emma Crawley-Boevey, Timothy J Dallman

Epidemiol Infect· June 2021

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Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.
Jane Hawkey, Kalani Paranagama, Kate S Baker, Rebecca J Bengtsson, François-Xavier Weill, Timothy J Dallman

Nat Commun· May 2021

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