Publications by authors named "Timothy Fuqua"

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Intergenic polyA/T tracts explain the propensity of yeast de novo genes to encode transmembrane domains.
Nikolaos Vakirlis, Timothy Fuqua

J Evol Biol· September 2025

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The latent cis-regulatory potential of mobile DNA in Escherichia coli.
Timothy Fuqua, Andreas Wagner

Nat Commun· May 2025

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Spherical harmonics texture extraction for versatile analysis of biological objects.
Oane Gros, Josiah B Passmore, Noa O Borst, Dominik Kutra, Wilco Nijenhuis, Timothy Fuqua

PLoS Comput Biol· January 2025

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The emergence and evolution of gene expression in genome regions replete with regulatory motifs.
Timothy Fuqua, Yiqiao Sun, Andreas Wagner

Elife· December 2024

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Mutational scans reveal differential evolvability of promoters and enhancers.
Xueying C Li, Timothy Fuqua, Maria Elize van Breugel, Justin Crocker

Philos Trans R Soc Lond B Biol Sci· May 2023

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Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila development.
Rafael Galupa, Gilberto Alvarez-Canales, Noa Ottilie Borst, Timothy Fuqua, Lautaro Gandara

Dev Cell· January 2023

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An open-source semi-automated robotics pipeline for embryo immunohistochemistry.
Timothy Fuqua, Jeff Jordan, Aliaksandr Halavatyi, Christian Tischer, Kerstin Richter

Sci Rep· May 2021

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Dense and pleiotropic regulatory information in a developmental enhancer.
Timothy Fuqua, Jeff Jordan, Maria Elize van Breugel, Aliaksandr Halavatyi, Christian Tischer

Nature· November 2020

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