Publications by authors named "Timothy J Rudge"

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WebCM: A Web-Based Platform for Multiuser Individual-Based Modeling of Multicellular Microbial Populations and Communities.
Jason Philippou, Guillermo Yáñez Feliú, Timothy J Rudge

ACS Synth Biol· June 2024

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Phage predation accelerates the spread of plasmid-encoded antibiotic resistance.
Chujin Ruan, Josep Ramoneda, Anton Kan, Timothy J Rudge, Gang Wang

Nat Commun· June 2024

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Genetic Network Design Automation with LOICA.
Gonzalo Vidal, Carolus Vitalis, Tamara Matúte, Isaac Núñez, Fernán Federici, Timothy J Rudge

Methods Mol Biol· March 2024

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Flapjack: Data Management and Analysis for Genetic Circuit Characterization.
Carolus Vitalis, Guillermo Yáñez Feliú, Gonzalo Vidal, Macarena Muñoz Silva, Tamara Matúte, Timothy J Rudge

Methods Mol Biol· March 2024

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Experimental Data Connector (XDC): Integrating the Capture of Experimental Data and Metadata Using Standard Formats and Digital Repositories.
Sai P Samineni, Gonzalo Vidal, Carlos Vitalis, Guillermo Yáñez Feliú, Timothy J Rudge

ACS Synth Biol· April 2023

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A computational framework for testing hypotheses of the minimal mechanical requirements for cell aggregation using early annual killifish embryogenesis as a model.
Ignacio Montenegro-Rojas, Guillermo Yañez, Emily Skog, Oscar Guerrero-Calvo, Martin Andaur-Lobos, Timothy J Rudge

Front Cell Dev Biol· March 2023

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Accurate characterization of dynamic microbial gene expression and growth rate profiles.
Gonzalo Vidal, Carlos Vidal-Céspedes, Macarena Muñoz Silva, Carlos Castillo-Passi, Guillermo Yáñez Feliú, Timothy J Rudge

Synth Biol (Oxf)· October 2022

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LOICA: Integrating Models with Data for Genetic Network Design Automation.
Gonzalo Vidal, Carlos Vitalis, Timothy J Rudge

ACS Synth Biol· May 2022

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Flapjack: Data Management and Analysis for Genetic Circuit Characterization.
Guillermo Yáñez Feliú, Benjamín Earle Gómez, Verner Codoceo Berrocal, Macarena Muñoz Silva, Isaac N Nuñez, Timothy J Rudge

ACS Synth Biol· January 2021

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Novel Tunable Spatio-Temporal Patterns From a Simple Genetic Oscillator Circuit.
Guillermo Yáñez Feliú, Gonzalo Vidal, Macarena Muñoz Silva, Timothy J Rudge

Front Bioeng Biotechnol· August 2020

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An equilibrium model for ribosome competition.
Pascal S Rogalla, Timothy J Rudge, Luca Ciandrini

Phys Biol· November 2019

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Artificial Symmetry-Breaking for Morphogenetic Engineering Bacterial Colonies.
Isaac N Nuñez, Tamara F Matute, Ilenne D Del Valle, Anton Kan, Atri Choksi, Timothy J Rudge

ACS Synth Biol· February 2017

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Synthetic Biology: opportunities for Chilean bioindustry and education.
Fernán Federici, Timothy J Rudge, Bernardo Pollak, Jim Haseloff, Rodrigo A Gutiérrez

Biol Res· March 2016

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Characterization of Intrinsic Properties of Promoters.
Timothy J Rudge, James R Brown, Fernan Federici, Neil Dalchau, Andrew Phillips

ACS Synth Biol· January 2016

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Orthogonal intercellular signaling for programmed spatial behavior.
Paul K Grant, Neil Dalchau, James R Brown, Fernan Federici, Timothy J Rudge

Mol Syst Biol· January 2016

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Cell polarity-driven instability generates self-organized, fractal patterning of cell layers.
Timothy J Rudge, Fernán Federici, Paul J Steiner, Anton Kan, Jim Haseloff

ACS Synth Biol· December 2013

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Computational modeling of synthetic microbial biofilms.
Timothy J Rudge, Paul J Steiner, Andrew Phillips, Jim Haseloff

ACS Synth Biol· August 2012

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Fast image reconstruction in fluorescence optical tomography using data compression.
Timothy J Rudge, Vadim Y Soloviev, Simon R Arridge

Opt Lett· March 2010

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