Publications by authors named "Timothy M D Ebbels"

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Taurine transport is a critical modulator of ionic fluxes during NLRP3 inflammasome activation.
Peter Rossi-Smith, Joohee Kim, Kamil Skirlo, Trevor Ferris, Jack P Green, Timothy M D Ebbels

Cell Rep· October 2025

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MAMSI: Integration of Multiassay Liquid Chromatography-Mass Spectrometry Metabolomics Data Using Multiview Machine Learning.
Lukas Kopecky, Caroline J Sands, María Gómez-Romero, Shivani Misra, Elizabeth J Want, Timothy M D Ebbels

Anal Chem· July 2025

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MetAssimulo 2.0: a web app for simulating realistic 1D and 2D metabolomic 1H NMR spectra.
Yan Yan, Beatriz Jiménez, Michael T Judge, Toby Athersuch, Maria De Iorio, Timothy M D Ebbels

Bioinformatics· March 2025

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Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning.
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Timothy M D Ebbels

Anal Chem· July 2024

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LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies.
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware

Bioinformatics· March 2024

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Recent advances in mass spectrometry-based computational metabolomics.
Timothy M D Ebbels, Justin J J van der Hooft, Haley Chatelaine, Corey Broeckling, Nicola Zamboni

Curr Opin Chem Biol· June 2023

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Identification of prediagnostic metabolites associated with prostate cancer risk by untargeted mass spectrometry-based metabolomics: A case-control study nested in the Northern Sweden Health and Disease Study.
Johnny R Östman, Rui C Pinto, Timothy M D Ebbels, Elin Thysell, Göran Hallmans

Int J Cancer· December 2022

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Problems, principles and progress in computational annotation of NMR metabolomics data.
Michael T Judge, Timothy M D Ebbels

Metabolomics· December 2022

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Single sample pathway analysis in metabolomics: performance evaluation and application.
Cecilia Wieder, Rachel P J Lai, Timothy M D Ebbels

BMC Bioinformatics· November 2022

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Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics.
Cecilia Wieder, Jacob G Bundy, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Timothy M D Ebbels

Environ Sci Technol· October 2022

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Blood pressure interactions with the DASH dietary pattern, sodium, and potassium: The International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP).
Queenie Chan, Gina M Wren, Chung-Ho E Lau, Timothy M D Ebbels, Rachel Gibson

Am J Clin Nutr· July 2022

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Automated Annotation of Untargeted All-Ion Fragmentation LC-MS Metabolomics Data with MetaboAnnotatoR.
Gonçalo Graça, Yuheng Cai, Chung-Ho E Lau, Panagiotis A Vorkas, Matthew R Lewis, Timothy M D Ebbels

Anal Chem· March 2022

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Progress towards an OECD reporting framework for transcriptomics and metabolomics in regulatory toxicology.
Joshua A Harrill, Mark R Viant, Carole L Yauk, Magdalini Sachana, Timothy W Gant, Timothy M D Ebbels

Regul Toxicol Pharmacol· October 2021

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Statistical analysis in metabolic phenotyping.
Benjamin J Blaise, Gonçalo D S Correia, Gordon A Haggart, Izabella Surowiec, Caroline Sands, Timothy M D Ebbels

Nat Protoc· September 2021

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Multiple-testing correction in metabolome-wide association studies.
Alina Peluso, Robert Glen, Timothy M D Ebbels

BMC Bioinformatics· February 2021

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Metabolic Signatures of Gestational Weight Gain and Postpartum Weight Loss in a Lifestyle Intervention Study of Overweight and Obese Women.
Chung-Ho E Lau, Victoria Taylor-Bateman, Panagiotis A Vorkas, Gonçalo Graça, Thanh-Huyen T Vu, Timothy M D Ebbels

Metabolites· December 2020

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Processing and Analysis of Untargeted Multicohort NMR Data.
Timothy M D Ebbels, Ibrahim Karaman, Gonçalo Graça

Methods Mol Biol· April 2020

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The association of fish consumption and its urinary metabolites with cardiovascular risk factors: the International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP).
Rachel Gibson, Chung-Ho E Lau, Ruey Leng Loo, Timothy M D Ebbels, Elena Chekmeneva

Am J Clin Nutr· February 2020

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Integrative analysis of time course metabolic data and biomarker discovery.
Takoua Jendoubi, Timothy M D Ebbels

BMC Bioinformatics· January 2020

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Predictive modelling using pathway scores: robustness and significance of pathway collections.
Marcelo P Segura-Lepe, Hector C Keun, Timothy M D Ebbels

BMC Bioinformatics· November 2019

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Serum metabolic signatures of coronary and carotid atherosclerosis and subsequent cardiovascular disease.
Ioanna Tzoulaki, Raphaële Castagné, Claire L Boulangé, Ibrahim Karaman, Elena Chekmeneva, Timothy M D Ebbels

Eur Heart J· September 2019

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Use cases, best practice and reporting standards for metabolomics in regulatory toxicology.
Mark R Viant, Timothy M D Ebbels, Richard D Beger, Drew R Ekman, David J T Epps

Nat Commun· July 2019

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PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Timothy M D Ebbels

Gigascience· February 2019

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Bayesian estimation of the number of protonation sites for urinary metabolites from NMR spectroscopic data.
Lifeng Ye, Maria De Iorio, Timothy M D Ebbels

Metabolomics· March 2018

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A comparison of human serum and plasma metabolites using untargeted H NMR spectroscopy and UPLC-MS.
Manuja Kaluarachchi, Claire L Boulangé, Ibrahim Karaman, John C Lindon, Timothy M D Ebbels

Metabolomics· February 2018

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