Publications by authors named "Timothy Sheils"

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SmartGraph API: Programmatic Knowledge Mining in Network-Pharmacology Setting.
Gergely Zahoránszky-Kőhalmi, Brandon Walker, Nathan Miller, Brett Yang, Dhatri V L Penna, Timothy Sheils

J Chem Inf Model· December 2024

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TIN-X version 3: update with expanded dataset and modernized architecture for enhanced illumination of understudied targets.
Vincent T Metzger, Daniel C Cannon, Jeremy J Yang, Stephen L Mathias, Cristian G Bologa, Timothy K Sheils

PeerJ· July 2024

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Overview of the Knowledge Management Center for Illuminating the Druggable Genome.
Tudor I Oprea, Cristian Bologa, Jayme Holmes, Stephen Mathias, Vincent T Metzger, Timothy K Sheils

Drug Discov Today· March 2024

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RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.
John Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra

Bioinformatics· January 2023

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Pharos 2023: an integrated resource for the understudied human proteome.
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger

Nucleic Acids Res· January 2023

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NCATS Inxight Drugs: a comprehensive and curated portal for translational research.
Vishal B Siramshetty, Ivan Grishagin, Ðắc-Trung Nguyễn, Tyler Peryea, Yulia Skovpen, Timothy Sheils

Nucleic Acids Res· January 2022

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Getting Started with the IDG KMC Datasets and Tools.
Eryk Kropiwnicki, Jessica L Binder, Jeremy J Yang, Jayme Holmes, Alexander Lachmann, Timothy Sheils

Curr Protoc· January 2022

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Scientific evidence based rare disease research discovery with research funding data in knowledge graph.
Qian Zhu, Ðắc-Trung Nguyễn, Timothy Sheils, Gioconda Alyea, Eric Sid

Orphanet J Rare Dis· November 2021

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Erratum: CATMoS: Collaborative Acute Toxicity Modeling Suite.
Kamel Mansouri, Agnes L Karmaus, Jeremy Fitzpatrick, Grace Patlewicz, Prachi Pradeep, Timothy Sheils

Environ Health Perspect· October 2021

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Erratum: CATMoS: Collaborative Acute Toxicity Modeling Suite.
Kamel Mansouri, Agnes Karmaus, Jeremy Fitzpatrick, Grace Patlewicz, Prachi Pradeep, Timothy Sheils

Environ Health Perspect· July 2021

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CATMoS: Collaborative Acute Toxicity Modeling Suite.
Kamel Mansouri, Agnes L Karmaus, Jeremy Fitzpatrick, Grace Patlewicz, Prachi Pradeep, Timothy Sheils

Environ Health Perspect· April 2021

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TCRD and Pharos 2021: mining the human proteome for disease biology.
Timothy K Sheils, Stephen L Mathias, Keith J Kelleher, Vishal B Siramshetty, Dac-Trung Nguyen

Nucleic Acids Res· January 2021

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How to Illuminate the Druggable Genome Using Pharos.
Timothy Sheils, Stephen L Mathias, Vishal B Siramshetty, Giovanni Bocci, Cristian G Bologa

Curr Protoc Bioinformatics· March 2020

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SmartGraph: a network pharmacology investigation platform.
Gergely Zahoránszky-Kőhalmi, Timothy Sheils, Tudor I Oprea

J Cheminform· January 2020

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Novel Consensus Architecture To Improve Performance of Large-Scale Multitask Deep Learning QSAR Models.
Alexey V Zakharov, Tongan Zhao, Dac-Trung Nguyen, Tyler Peryea, Timothy Sheils

J Chem Inf Model· November 2019

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Pharos: Collating protein information to shed light on the druggable genome.
Dac-Trung Nguyen, Stephen Mathias, Cristian Bologa, Soren Brunak, Nicolas Fernandez, Timothy Sheils

Nucleic Acids Res· January 2017

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