Publications by authors named "Timothy Straub"

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The impact of an oral purified microbiome therapeutic on the gastrointestinal microbiome.
Jessica A Bryant, Marin Vulić, Emily A Walsh, Edward G Allen, Nicholas J Beauchemin, Timothy J Straub

Nat Med· January 2026

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Comparability of Gastrointestinal Microbiome and Bile Acid Profiles in Patients With First or Multiply Recurrent Clostridioides difficile Infection.
Jessica A Bryant, Timothy J Straub, Darrell S Pardi, Kevin D Litcofsky, Colleen R Kelly

J Infect Dis· November 2025

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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection.
Mark G Young, Timothy J Straub, Colin J Worby, Hayden C Metsky, Andreas Gnirke

Nat Commun· November 2024

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Distinct transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection.
Mark G Young, Timothy J Straub, Colin J Worby, Hayden C Metsky, Andreas Gnirke

bioRxiv· June 2024

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Impact of a Purified Microbiome Therapeutic on Abundance of Antimicrobial Resistance Genes in Patients With Recurrent Clostridioides difficile Infection.
Timothy J Straub, Mary-Jane Lombardo, Jessica A Bryant, Liyang Diao, Thomas P Lodise

Clin Infect Dis· April 2024

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SER-109: An Oral Investigational Microbiome Therapeutic for Patients with Recurrent Infection (rCDI).
Sahil Khanna, Matthew Sims, Thomas J Louie, Monika Fischer, Kerry LaPlante, Timothy J Straub

Antibiotics (Basel)· September 2022

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Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study.
Emily LaVerriere, Philipp Schwabl, Manuela Carrasquilla, Aimee R Taylor, Zachary M Johnson, Timothy J Straub

Mol Ecol Resour· August 2022

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Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women.
Colin J Worby, Henry L Schreiber, Timothy J Straub, Lucas R van Dijk, Ryan A Bronson

Nat Microbiol· May 2022

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StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.
Lucas R van Dijk, Bruce J Walker, Timothy J Straub, Colin J Worby, Alexandra Grote

Genome Biol· March 2022

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Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections.
Timothy J Straub, Wen-Chi Chou, Abigail L Manson, Henry L Schreiber, Bruce J Walker

BMC Microbiol· February 2021

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The Anopheles coluzzii microbiome and its interaction with the intracellular parasite Wolbachia.
Timothy J Straub, W Robert Shaw, Perrine Marcenac, Simon P Sawadogo, Roch K Dabiré

Sci Rep· August 2020

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Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data.
Christine Anyansi, Timothy J Straub, Abigail L Manson, Ashlee M Earl, Thomas Abeel

Front Microbiol· August 2020

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An integrated experimental-computational approach for predicting virulence in New Zealand white rabbits and humans following inhalation exposure to Bacillus anthracis spores.
Becky M Hess, Dennis G Thomas, Thomas J Weber, Janine R Hutchison, Timothy M Straub

PLoS One· March 2020

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QuantTB - a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data.
Christine Anyansi, Arlin Keo, Bruce J Walker, Timothy J Straub, Abigail L Manson

BMC Genomics· January 2020

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Chicken Meat-Associated Enterococci: Influence of Agricultural Antibiotic Use and Connection to the Clinic.
Abigail L Manson, Daria Van Tyne, Timothy J Straub, Sarah Clock, Michael Crupain

Appl Environ Microbiol· November 2019

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Probing sexual commitment at the single-cell level.
Nicolas M B Brancucci, Mariana De Niz, Timothy J Straub, Deepali Ravel, Lauriane Sollelis

Wellcome Open Res· October 2018

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Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C.
Stephen M J Pollo, Abigail A Adebusuyi, Timothy J Straub, Julia M Foght, Olga Zhaxybayeva

Extremophiles· November 2017

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A null model for microbial diversification.
Timothy J Straub, Olga Zhaxybayeva

Proc Natl Acad Sci U S A· July 2017

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Tracing the Enterococci from Paleozoic Origins to the Hospital.
François Lebreton, Abigail L Manson, Jose T Saavedra, Timothy J Straub, Ashlee M Earl

Cell· May 2017

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Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila.
Lori R Shapiro, Erin D Scully, Timothy J Straub, Jihye Park, Andrew G Stephenson

Genome Biol Evol· March 2016

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Draft Genome Sequence of Erwinia tracheiphila, an Economically Important Bacterial Pathogen of Cucurbits.
Lori R Shapiro, Erin D Scully, Dana Roberts, Timothy J Straub, Scott M Geib

Genome Announc· June 2015

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Construction of an in vitro primary lung co-culture platform derived from New Zealand white rabbits.
Joshua D Powell, Becky M Hess, Janine R Hutchison, Timothy M Straub

In Vitro Cell Dev Biol Anim· May 2015

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Estimated copy number of Bacillus anthracis plasmids pXO1 and pXO2 using digital PCR.
Timothy Straub, Cheryl Baird, Rachel A Bartholomew, Heather Colburn, Derrick Seiner

J Microbiol Methods· January 2013

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Direct O-glycosidation of resin bound thioglycosides.
Son Hong Nguyen, Adam H Trotta, John Cao, Timothy J Straub, Clay S Bennett

Org Biomol Chem· March 2012

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Human norovirus infection of caco-2 cells grown as a three-dimensional tissue structure.
Timothy M Straub, Rachel A Bartholomew, Catherine O Valdez, Nancy B Valentine, Alice Dohnalkova

J Water Health· June 2011

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