Publications by authors named "Toby D Hocking"

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Cross-validation for training and testing co-occurrence network inference algorithms.
Daniel Agyapong, Jeffrey Ryan Propster, Jane Marks, Toby Dylan Hocking

BMC Bioinformatics· March 2025

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Reply to: Model uncertainty obscures major driver of soil carbon.
Feng Tao, Benjamin Z Houlton, Serita D Frey, Johannes Lehmann, Stefano Manzoni, Toby D Hocking

Nature· March 2024

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Predicting Neuromuscular Engagement to Improve Gait Training with a Robotic Ankle Exoskeleton.
Karl Harshe, Jack R Williams, Toby D Hocking, Zachary F Lerner

IEEE Robot Autom Lett· August 2023

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Microbial carbon use efficiency promotes global soil carbon storage.
Feng Tao, Yuanyuan Huang, Bruce A Hungate, Stefano Manzoni, Serita D Frey, Toby D Hocking

Nature· June 2023

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SPARSEMODr: Rapidly simulate spatially explicit and stochastic models of COVID-19 and other infectious diseases.
Joseph R Mihaljevic, Seth Borkovec, Saikanth Ratnavale, Toby D Hocking, Kelsey E Banister

Biol Methods Protoc· September 2022

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Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models.
Arnaud Liehrmann, Guillem Rigaill, Toby Dylan Hocking

BMC Bioinformatics· June 2021

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Machine learning algorithms for simultaneous supervised detection of peaks in multiple samples and cell types.
Toby Dylan Hocking, Guillaume Bourque

Pac Symp Biocomput· March 2021

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Fast nonconvex deconvolution of calcium imaging data.
Sean W Jewell, Toby Dylan Hocking, Paul Fearnhead, Daniela M Witten

Biostatistics· October 2020

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Genomic Amplifications and Distal 6q Loss: Novel Markers for Poor Survival in High-risk Neuroblastoma Patients.
Pauline Depuydt, Valentina Boeva, Toby D Hocking, Robrecht Cannoodt, Inge M Ambros

J Natl Cancer Inst· October 2018

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ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants.
Najmeh Alirezaie, Kristin D Kernohan, Taila Hartley, Jacek Majewski, Toby Dylan Hocking

Am J Hum Genet· October 2018

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Meta-mining of copy number profiles of high-risk neuroblastoma tumors.
Pauline Depuydt, Jan Koster, Valentina Boeva, Toby D Hocking, Frank Speleman

Sci Data· October 2018

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Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.
Toby Dylan Hocking, Patricia Goerner-Potvin, Andreanne Morin, Xiaojian Shao, Tomi Pastinen

Bioinformatics· February 2017

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Clonal heterogeneity of lymphoid malignancies correlates with poor prognosis.
Miyuki Suguro, Noriaki Yoshida, Akira Umino, Harumi Kato, Hiroyuki Tagawa, Toby D Hocking

Cancer Sci· July 2014

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SegAnnDB: interactive Web-based genomic segmentation.
Toby D Hocking, Valentina Boeva, Guillem Rigaill, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey

Bioinformatics· June 2014

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Learning smoothing models of copy number profiles using breakpoint annotations.
Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Valentina Boeva, Julie Cappo

BMC Bioinformatics· May 2013

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A Bayesian outlier criterion to detect SNPs under selection in large data sets.
Mathieu Gautier, Toby Dylan Hocking, Jean-Louis Foulley

PLoS One· August 2010

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Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, Toby D Hocking

Nat Biotechnol· June 2008

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