Publications by authors named "Todd Vision"

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E
Evolutionary rescue under demographic and environmental stochasticity.
Kuangyi Xu, Todd J Vision, Maria R Servedio

J Evol Biol· October 2023

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Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.
Diego S Porto, Wasila M Dahdul, Hilmar Lapp, James P Balhoff, Todd J Vision

Syst Biol· October 2022

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Do synthesis centers synthesize? A semantic analysis of topical diversity in research.
Edward J Hackett, Erin Leahey, John N Parker, Ismael Rafols, Stephanie E Hampton, Todd J Vision

Res Policy· January 2021

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Genetic architecture influences when and how hybridization contributes to colonization.
Bryan Reatini, Todd J Vision

Evolution· August 2020

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Journal data policies: Exploring how the understanding of editors and authors corresponds to the policies themselves.
Thu-Mai Christian, Amanda Gooch, Todd Vision, Elizabeth Hull

PLoS One· June 2020

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A Logical Model of Homology for Comparative Biology.
Paula M Mabee, James P Balhoff, Wasila M Dahdul, Hilmar Lapp, Christopher J Mungall, Todd J Vision

Syst Biol· March 2020

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Complete plastome sequences of two species from the Galápagos Islands.
Bryan Reatini, Maria de Lourdes Torres, Hugo Valdebenito, Todd Vision

F1000Res· November 2019

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Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation.
Prashanti Manda, Alexander Hahn, Katherine Beekman, Todd J Vision

PeerJ Comput Sci· November 2019

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Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
Wasila Dahdul, Prashanti Manda, Hong Cui, James P Balhoff, T Alexander Dececchi, Todd Vision

Database (Oxford)· January 2018

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INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.
Prashanti Manda, Christopher J Mungall, James P Balhoff, Hilmar Lapp, Todd J Vision

Pac Symp Biocomput· October 2016

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Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.
Richard C Edmunds, Baofeng Su, James P Balhoff, B Frank Eames, Wasila M Dahdul, Todd J Vision

Mol Biol Evol· January 2016

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Open data for evolutionary synthesis: an introduction to the NESCent collection.
Todd J Vision, Karen Cranston

Sci Data· December 2015

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Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.
Prashanti Manda, James P Balhoff, Hilmar Lapp, Paula Mabee, Todd J Vision

Genesis· August 2015

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Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.
James P Balhoff, Wasila M Dahdul, T Alexander Dececchi, Hilmar Lapp, Paula M Mabee, Todd J Vision

J Biomed Semantics· November 2014

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The standing pool of genomic structural variation in a natural population of Mimulus guttatus.
Lex E Flagel, John H Willis, Todd J Vision

Genome Biol Evol· January 2014

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The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
Peter E Midford, Thomas Alex Dececchi, James P Balhoff, Wasila M Dahdul, Nizar Ibrahim, Todd J Vision

J Biomed Semantics· November 2013

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Data reuse and the open data citation advantage.
Heather A Piwowar, Todd J Vision

PeerJ· October 2013

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Science incubators: synthesis centers and their role in the research ecosystem.
Allen Rodrigo, Susan Alberts, Karen Cranston, Joel Kingsolver, Hilmar Lapp, Todd Vision

PLoS Biol· July 2013

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A decadal view of biodiversity informatics: challenges and priorities.
Alex Hardisty, Dave Roberts, , Wouter Addink, Bart Aelterman, Todd Vision

BMC Ecol· April 2013

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The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Stephen A Goff, Matthew Vaughn, Sheldon McKay, Eric Lyons, Ann E Stapleton, Todd J Vision

Front Plant Sci· August 2012

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500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.
By Paula Mabee, James P Balhoff, Wasila M Dahdul, Hilmar Lapp, Peter E Midford, Todd J Vision

J Appl Ichthyol· June 2012

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Data archiving is a good investment.
Heather A Piwowar, Todd J Vision, Michael C Whitlock

Nature· May 2011

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.
J Gordon Burleigh, Mukul S Bansal, Oliver Eulenstein, Stefanie Hartmann, André Wehe, Todd J Vision

Syst Biol· March 2011

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The teleost anatomy ontology: anatomical representation for the genomics age.
Wasila M Dahdul, John G Lundberg, Peter E Midford, James P Balhoff, Hilmar Lapp, Todd J Vision

Syst Biol· July 2010

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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).
Jason E Stajich, Sarah K Wilke, Dag Ahrén, Chun Hang Au, Bruce W Birren, Todd J Vision

Proc Natl Acad Sci U S A· June 2010

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