Publications by authors named "Tom de Greef"

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PhaseXplorer Creates High-Dimensional Phase Diagrams with Closed-Loop Active Learning.
Stef A H Jansen, Lasse S A Dreyer, Jule van Basten, Yihan Yao, Daniel E Otzen, Tom F A de Greef

ACS Nano· November 2025

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Real-Time Monitoring of DNA Origami-Cell Interactions via Single Particle Tracking.
Indra Van Zundert, Elena Spezzani, Roger R Brillas, Lars Paffen, Angelina Yurchenko, Tom F A de Greef

Small· October 2025

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Bayesian Optimization for Multicomponent Supramolecular Systems.
Stef A H Jansen, Albert J Markvoort, Freek V de Graaf, Martin G T A Rutten, Patricia Y W Dankers, Tom F A de Greef

J Am Chem Soc· September 2025

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Challenges and opportunities in DNA computing and data storage.
Stéphane D Lemaire, David Turek, Dave Landsman, Marthe Colotte, Tom F A de Greef

Nat Nanotechnol· June 2025

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DNA Origami Barcodes for Immunostaining.
Praneetha Sundar Prakash, Foram M Joshi, Eric Vogelsberg, Glenn A O Cremers, Fatih N Gür, Tom F A de Greef

ACS Appl Mater Interfaces· March 2025

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Mechanism-based and data-driven modeling in cell-free synthetic biology.
Angelina Yurchenko, Gökçe Özkul, Natal A W van Riel, Jan C M van Hest, Tom F A de Greef

Chem Commun (Camb)· June 2024

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DNA as a universal chemical substrate for computing and data storage.
Shuo Yang, Bas W A Bögels, Fei Wang, Can Xu, Hongjing Dou, Tom F A de Greef

Nat Rev Chem· March 2024

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DNA Reaction System That Acquires Classical Conditioning.
Takashi Nakakuki, Masato Toyonari, Kaori Aso, Keiji Murayama, Hiroyuki Asanuma, Tom F A de Greef

ACS Synth Biol· February 2024

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Bilayer Microfluidic Device for Combinatorial Plug Production.
Maaruthy Yelleswarapu, Sofia Spinthaki, Tom F A de Greef, Federica Eduati

J Vis Exp· December 2023

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Engineering a scalable and orthogonal platform for synthetic communication in mammalian cells.
Anna-Maria Makri Pistikou, Glenn A O Cremers, Bryan L Nathalia, Theodorus J Meuleman, Bas W A Bögels, Tom F A de Greef

Nat Commun· November 2023

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DNA storage in thermoresponsive microcapsules for repeated random multiplexed data access.
Bas W A Bögels, Bichlien H Nguyen, David Ward, Levena Gascoigne, David P Schrijver, Tom F A de Greef

Nat Nanotechnol· August 2023

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Noise Minimization in Cell-Free Gene Expression.
Mart W Bartelds, Óscar García-Blay, Pieter G A Verhagen, Elise J Wubbolts, Bob van Sluijs, Tom F A de Greef

ACS Synth Biol· August 2023

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A Theoretical Framework for Implementable Nucleic Acids Feedback Systems.
Nuno M G Paulino, Mathias Foo, Tom F A de Greef, Jongmin Kim, Declan G Bates

Bioengineering (Basel)· April 2023

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A Synthetic Protocell-Based Heparin Scavenger.
Qing Liu, Shuo Yang, Iris Seitz, Anna-Maria Makri Pistikou, Tom F A de Greef

Small· March 2023

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Orthogonal Light-Dependent Membrane Adhesion Induces Social Self-Sorting and Member-Specific DNA Communication in Synthetic Cell Communities.
Ali Heidari, Oya I Sentürk, Shuo Yang, Alex Joesaar, Pierangelo Gobbo, Tom F A de Greef

Small· March 2023

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Engineering cytokine therapeutics.
Jeroen Deckers, Tom Anbergen, Ayla M Hokke, Anne de Dreu, David P Schrijver, Tom F A de Greef

Nat Rev Bioeng· February 2023

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Precision and Accuracy of Receptor Quantification on Synthetic and Biological Surfaces Using DNA-PAINT.
Roger Riera, Emmanouil Archontakis, Glenn Cremers, Tom de Greef, Peter Zijlstra

ACS Sens· January 2023

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A universal microfluidic approach for integrated analysis of temporal homocellular and heterocellular signaling and migration dynamics.
Haowen Yang, Nidhi Sinha, Ulfert Rand, Hansjörg Hauser, Mario Köster, Tom F A de Greef

Biosens Bioelectron· September 2022

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Protocellular CRISPR/Cas-Based Diffusive Communication Using Transcriptional RNA Signaling.
Shuo Yang, Alex Joesaar, Bas W A Bögels, Stephen Mann, Tom F A de Greef

Angew Chem Int Ed Engl· June 2022

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A microfluidic optimal experimental design platform for forward design of cell-free genetic networks.
Bob van Sluijs, Roel J M Maas, Ardjan J van der Linden, Tom F A de Greef, Wilhelm T S Huck

Nat Commun· June 2022

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DNA Input Classification by a Riboregulator-Based Cell-Free Perceptron.
Ardjan J van der Linden, Pascal A Pieters, Mart W Bartelds, Bryan L Nathalia, Peng Yin, Tom F A de Greef

ACS Synth Biol· April 2022

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Determinants of Ligand-Functionalized DNA Nanostructure-Cell Interactions.
Glenn A O Cremers, Bas J H M Rosier, Ab Meijs, Nicholas B Tito, Sander M J van Duijnhoven, Tom F A de Greef

J Am Chem Soc· July 2021

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A plug-and-play platform of ratiometric bioluminescent sensors for homogeneous immunoassays.
Yan Ni, Bas J H M Rosier, Eva A van Aalen, Eva T L Hanckmann, Lieuwe Biewenga, Tom F A de Greef

Nat Commun· July 2021

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Cell-Free Characterization of Coherent Feed-Forward Loop-Based Synthetic Genetic Circuits.
Pascal A Pieters, Bryan L Nathalia, Ardjan J van der Linden, Peng Yin, Jongmin Kim, Tom F A de Greef

ACS Synth Biol· June 2021

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Dynamic Protease Activation on a Multimeric Synthetic Protein Scaffold via Adaptable DNA-Based Recruitment Domains.
Tsuyoshi Mashima, Bas J H M Rosier, Koji Oohora, Tom F A de Greef, Takashi Hayashi

Angew Chem Int Ed Engl· May 2021

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