Publications by authors named "Tomas Vinar"

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Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.
Andrew D Foote, Nagarjun Vijay, María C Ávila-Arcos, Robin W Baird, John W Durban, Matteo Fumagalli, Richard A Gibbs, M Bradley Hanson, Thorfinn S Korneliussen, Michael D Martin

Nat Commun· May 2016

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Alignment-free detection of differences between sequencing datasets.
Alessia Petescia, Luca Denti, Askar Gafurov, Viktória Hodorová, Jozef Nosek

iScience· November 2025

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Fast Context-Aware Analysis of Genome Annotation Colocalization.
Askar Gafurov, Tomáš VinaŘ, Paul Medvedev, BroŇa Brejová

J Comput Biol· October 2024

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Reduction of Ribosomal Expansion Segments in Yeast Species of the Magnusiomyces/Saprochaete Clade.
Filip Brázdovič, Broňa Brejová, Barbara Siváková, Peter Baráth, Filip Kerák

Genome Biol Evol· August 2024

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Maximum-scoring path sets on pangenome graphs of constant treewidth.
Broňa Brejová, Travis Gagie, Eva Herencsárová, Tomáš Vinař

Front Bioinform· July 2024

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Chromosome-level genome assembly of the yeast Lodderomyces beijingensis reveals the genetic nature of metabolic adaptations and identifies subtelomeres as hotspots for amplification of mating type loci.
Broňa Brejová, Viktória Hodorová, Sofia Mutalová, Andrea Cillingová, Ľubomír Tomáška

DNA Res· June 2024

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Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts.
Askar Gafurov, Tomas Vinar, Paul Medvedev, Brona Brejova

bioRxiv· May 2024

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Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts.
Askar Gafurov, Tomáš Vinař, Paul Medvedev, Broňa Brejová

Res Comput Mol Biol· May 2024

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plASgraph2: using graph neural networks to detect plasmid contigs from an assembly graph.
Janik Sielemann, Katharina Sielemann, Broňa Brejová, Tomáš Vinař, Cedric Chauve

Front Microbiol· October 2023

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y-mtPTM: Yeast mitochondrial posttranslational modification database.
Bronislava Brejová, Veronika Vozáriková, Ivan Agarský, Hana Derková, Matej Fedor

Genetics· July 2023

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WarpSTR: determining tandem repeat lengths using raw nanopore signals.
Jozef Sitarčík, Tomáš Vinař, Broňa Brejová, Werner Krampl, Jaroslav Budiš

Bioinformatics· June 2023

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PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning.
Aniket Mane, Mahsa Faizrahnemoon, Tomáš Vinař, Broňa Brejová, Cedric Chauve

Bioinformatics· June 2023

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Dynamic Pooling Improves Nanopore Base Calling Accuracy.
Vladimir Boza, Peter Peresini, Brona Brejova, Tomas Vinar

IEEE/ACM Trans Comput Biol Bioinform· April 2023

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Chromosome-Level Genome Assembly of the Yeast Candida verbasci.
Broňa Brejová, Viktória Hodorová, Hana Lichancová, Eunika Peričková, Veronika Anna Šoucová

Microbiol Resour Announc· March 2023

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VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples.
Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová

BMC Bioinformatics· December 2022

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Author Correction: Comparative and demographic analysis of orang-utan genomes.
Devin P Locke, LaDeana W Hillier, Wesley C Warren, Kim C Worley, Lynne V Nazareth, Tomas Vinar

Nature· August 2022

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Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources.
Andrea Cillingová, Renáta Tóth, Anna Mojáková, Igor Zeman, Romana Vrzoňová

PLoS Genet· March 2022

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Monoclonal antibodies targeting two immunodominant epitopes on the Spike protein neutralize emerging SARS-CoV-2 variants of concern.
Branislav Kovacech, Lubica Fialova, Peter Filipcik, Rostislav Skrabana, Monika Zilkova

EBioMedicine· February 2022

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Nanopore base calling on the edge.
Peter Perešíni, Vladimír Boža, Broňa Brejová, Tomáš Vinař

Bioinformatics· December 2021

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A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020.
Broňa Brejová, Kristína Boršová, Viktória Hodorová, Viktória Čabanová, Lenka Reizigová

Virus Genes· December 2021

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Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols.
Broňa Brejová, Kristína Boršová, Viktória Hodorová, Viktória Čabanová, Askar Gafurov

PLoS One· November 2021

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Surveillance of SARS-CoV-2 lineage B.1.1.7 in Slovakia using a novel, multiplexed RT-qPCR assay.
Kristína Boršová, Evan D Paul, Viera Kováčová, Monika Radvánszka, Roman Hajdu

Sci Rep· October 2021

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DeepNano-blitz: a fast base caller for MinION nanopore sequencers.
Vladimír Boža, Peter Perešíni, Broňa Brejová, Tomáš Vinař

Bioinformatics· August 2020

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A draft genome sequence of the elusive giant squid, Architeuthis dux.
Rute R da Fonseca, Alvarina Couto, Andre M Machado, Brona Brejova, Carolin B Albertin, Tomas Vinar

Gigascience· January 2020

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Genome Sequence of the Yeast CBS 517.90.
Viktória Hodorová, Hana Lichancová, Stanislav Zubenko, Karolina Sienkiewicz, Sarah Mae U Penir

Microbiol Resour Announc· December 2019

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Genome Sequence of an Arthroconidial Yeast, Saprochaete fungicola CBS 625.85.
Broňa Brejová, Hana Lichancová, Viktória Hodorová, Martina Neboháčová, Ľubomír Tomáška

Microbiol Resour Announc· April 2019

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