Publications by authors named "Tomasz Rog"

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Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.
Franziska Ragaller, Luca Andronico, Jan Sykora, Waldemar Kulig, Tomasz Rog

Open Biol· September 2022

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Maturation of the SARS-CoV-2 virus is regulated by dimerization of its main protease.
Shreyas Kaptan, Mykhailo Girych, Giray Enkavi, Waldemar Kulig, Vivek Sharma, Tomasz Rog

Comput Struct Biotechnol J· June 2022

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Examining the Effect of Charged Lipids on Mitochondrial Outer Membrane Dynamics Using Atomistic Simulations.
Aline A Oliveira, Tomasz Róg, Albérico B F da Silva, Rommie E Amaro, Mark S Johnson

Biomolecules· January 2022

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Mechanistic Understanding from Molecular Dynamics in Pharmaceutical Research 2: Lipid Membrane in Drug Design.
Tomasz Róg, Mykhailo Girych, Alex Bunker

Pharmaceuticals (Basel)· October 2021

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Can di-4-ANEPPDHQ reveal the structural differences between nanodiscs and liposomes?
Anna Chmielińska, Piotr Stepien, Piotr Bonarek, Mykhailo Girych, Giray Enkavi, Tomasz Rog

Biochim Biophys Acta Biomembr· September 2021

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Mechanistic Insight into How PEGylation Reduces the Efficacy of pH-Sensitive Liposomes from Molecular Dynamics Simulations.
Mohammad Mahmoudzadeh, Aniket Magarkar, Artturi Koivuniemi, Tomasz Róg, Alex Bunker

Mol Pharm· July 2021

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Cholesterol-recognition motifs in the transmembrane domain of the tyrosine kinase receptor family: The case of TRKB.
Cecilia Cannarozzo, Senem Merve Fred, Mykhailo Girych, Caroline Biojone, Giray Enkavi

Eur J Neurosci· May 2021

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Complexity of seemingly simple lipid nanodiscs.
Piotr Stepien, Bozena Augustyn, Chetan Poojari, Wojciech Galan, Agnieszka Polit, Tomasz Rog

Biochim Biophys Acta Biomembr· November 2020

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Rigorous Computational Study Reveals What Docking Overlooks: Double Trouble from Membrane Association in Protein Kinase C Modulators.
Saara Lautala, Riccardo Provenzani, Artturi Koivuniemi, Waldemar Kulig, Virpi Talman

J Chem Inf Model· November 2020

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Mechanistic Understanding From Molecular Dynamics Simulation in Pharmaceutical Research 1: Drug Delivery.
Alex Bunker, Tomasz Róg

Front Mol Biosci· November 2020

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Cooperative Effects of an Antifungal Moiety and DMSO on Pore Formation over Lipid Membranes Revealed by Free Energy Calculations.
Gari Kasparyan, Chetan Poojari, Tomasz Róg, Jochen S Hub

J Phys Chem B· October 2020

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The F1 loop of the talin head domain acts as a gatekeeper in integrin activation and clustering.
Sampo Kukkurainen, Latifeh Azizi, Pingfeng Zhang, Marie-Claude Jacquier, Mo Baikoghli

J Cell Sci· October 2020

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Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes.
Agnieszka Olżyńska, Waldemar Kulig, Heikki Mikkolainen, Tomasz Czerniak, Piotr Jurkiewicz, Tomasz Rog

Langmuir· September 2020

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Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor.
Fabio Lolicato, Hanna Juhola, Agata Zak, Pekka A Postila, Annina Saukko

ACS Chem Neurosci· July 2020

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Syndecan-4 tunes cell mechanics by activating the kindlin-integrin-RhoA pathway.
Antonios Chronopoulos, Stephen D Thorpe, Ernesto Cortes, Dariusz Lachowski, Alistair J Rice

Nat Mater· June 2020

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Cholesterol Reduces Partitioning of Antifungal Drug Itraconazole into Lipid Bilayers.
Chetan Poojari, Agata Zak, Monika Dzieciuch-Rojek, Alex Bunker, Mariusz Kepczynski

J Phys Chem B· March 2020

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A Perspective: Active Role of Lipids in Neurotransmitter Dynamics.
Pekka A Postila, Tomasz Róg

Mol Neurobiol· February 2020

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Cholesteryl Hemisuccinate Is Not a Good Replacement for Cholesterol in Lipid Nanodiscs.
Bozena Augustyn, Piotr Stepien, Chetan Poojari, Edouard Mobarak, Agnieszka Polit

J Phys Chem B· November 2019

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Behavior of the DPH fluorescence probe in membranes perturbed by drugs.
Chetan Poojari, Natalia Wilkosz, Rafael B Lira, Rumiana Dimova, Piotr Jurkiewicz

Chem Phys Lipids· September 2019

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Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.
Giray Enkavi, Matti Javanainen, Waldemar Kulig, Tomasz Róg, Ilpo Vattulainen

Chem Rev· May 2019

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Complex Behavior of Phosphatidylcholine-Phosphatidic Acid Bilayers and Monolayers: Effect of Acyl Chain Unsaturation.
Waldemar Kulig, Hanna Korolainen, Maria Zatorska, Urszula Kwolek, Paweł Wydro

Langmuir· April 2019

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How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative.
Edouard Mobarak, Matti Javanainen, Waldemar Kulig, Alf Honigmann, Erdinc Sezgin, Tomasz Rog

Biochim Biophys Acta Biomembr· November 2018

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Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico.
Edouard Mobarak, Liliana Håversen, Moutusi Manna, Mikael Rutberg, Malin Levin, Tomasz Rog

Sci Rep· September 2018

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