Publications by authors named "Tony Heitkam"

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TEtrimmer: a tool to automate the manual curation of transposable elements.
Jiangzhao Qian, Hang Xue, Shujun Ou, Ludwig Mann, Jessica Storer, Tony Heitkam

Nat Commun· September 2025

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Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution.
Woorin Kim, Nicola Schmidt, Matthias Jost, Elijah Mbandi Mkala, Sylke Winkler, Tony Heitkam

New Phytol· August 2025

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Repeatome landscapes and cytogenetics of hortensias provide a framework to trace Hydrangea evolution and domestication.
Sara Ishiguro, Shota Taniguchi, Nicola Schmidt, Matthias Jost, Stefan Wanke, Tony Heitkam

Ann Bot· February 2025

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Preparing high-quality chromosome spreads from Crocus species for karyotyping and FISH.
Abdullah El-Nagish, Susan Liedtke, Sarah Breitenbach, Tony Heitkam

Mol Cytogenet· February 2025

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BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives.
Nicola Schmidt, Sophie Maiwald, Ludwig Mann, Beatrice Weber, Kathrin M Seibt, Tony Heitkam

BMC Res Notes· November 2024

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Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets.
Nicola Schmidt, Katharina Sielemann, Sarah Breitenbach, Jörg Fuchs, Boas Pucker, Tony Heitkam

Plant J· April 2024

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The Dynamic Interplay Between Ribosomal DNA and Transposable Elements: A Perspective From Genomics and Cytogenetics.
Sònia Garcia, Ales Kovarik, Sophie Maiwald, Ludwig Mann, Nicola Schmidt, Tony Heitkam

Mol Biol Evol· March 2024

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Evolving Together: Cassandra Retrotransposons Gradually Mirror Promoter Mutations of the 5S rRNA Genes.
Sophie Maiwald, Ludwig Mann, Sònia Garcia, Tony Heitkam

Mol Biol Evol· February 2024

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High-fidelity (repeat) consensus sequences from short reads using combined read clustering and assembly.
Ludwig Mann, Kristin Balasch, Nicola Schmidt, Tony Heitkam

BMC Genomics· January 2024

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How to start a LINE: 5' switching rejuvenates LINE retrotransposons in tobacco and related Nicotiana species.
Nora Hartig, Kathrin M Seibt, Tony Heitkam

Plant J· July 2023

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Preparation of Mitotic Chromosomes with the Dropping Technique.
Nicola Schmidt, Beatrice Weber, Jessica Klekar, Susan Liedtke, Sarah Breitenbach, Tony Heitkam

Methods Mol Biol· June 2023

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Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA.
Luise Schulte, Stefano Meucci, Kathleen R Stoof-Leichsenring, Tony Heitkam, Nicola Schmidt

Commun Biol· June 2022

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Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives.
Katharina Sielemann, Boas Pucker, Nicola Schmidt, Prisca Viehöver, Bernd Weisshaar, Tony Heitkam

BMC Genomics· February 2022

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Ancient Artworks and Crocus Genetics Both Support Saffron's Origin in Early Greece.
Seyyedeh-Sanam Kazemi-Shahandashti, Ludwig Mann, Abdullah El-Nagish, Dörte Harpke, Zahra Nemati, Tony Heitkam

Front Plant Sci· February 2022

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ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data.
Ludwig Mann, Kathrin M Seibt, Beatrice Weber, Tony Heitkam

BMC Bioinformatics· January 2022

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Can we have it all? Repurposing target capture for repeat genomics. A commentary on: 'Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA'.
Tony Heitkam, Sònia Garcia

Ann Bot· November 2021

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Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris).
Nicola Schmidt, Kathrin M Seibt, Beatrice Weber, Trude Schwarzacher, Thomas Schmidt, Tony Heitkam

Ann Bot· August 2021

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Comparative Repeat Profiling of Two Closely Related Conifers ( and ) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs.
Tony Heitkam, Luise Schulte, Beatrice Weber, Susan Liedtke, Sarah Breitenbach

Front Genet· July 2021

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TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.

Mob DNA· June 2021

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The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability.
Sophie Maiwald, Beatrice Weber, Kathrin M Seibt, Thomas Schmidt, Tony Heitkam

Ann Bot· January 2021

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Satellite DNA landscapes after allotetraploidization of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes.
Tony Heitkam, Beatrice Weber, Ines Walter, Susan Liedtke, Charlotte Ost

Plant J· July 2020

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Divergence of 3' ends as a driver of short interspersed nuclear element (SINE) evolution in the Salicaceae.
Anja Kögler, Kathrin M Seibt, Tony Heitkam, Kristin Morgenstern, Birgit Reiche

Plant J· July 2020

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Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Genomes.
Nusrat Sultana, Gerhard Menzel, Tony Heitkam, Kenji K Kojima, Weidong Bao

Genes (Basel)· May 2020

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Balancing Retrospection and Visions: The Cytogenetics Group of the Society of Plant Breeding (GPZ) Came Together in Dresden.
Tony Heitkam

Cytogenet Genome Res· March 2020

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The conserved 3' Angio-domain defines a superfamily of short interspersed nuclear elements (SINEs) in higher plants.
Kathrin M Seibt, Thomas Schmidt, Tony Heitkam

Plant J· February 2020

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