Publications by authors named "Trachette Jackson"

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Advances in surrogate modeling for biological agent-based simulations: trends, challenges, and future prospects.
Kerri-Ann Norton, Daniel Bergman, Harsh Vardhan Jain, Trachette Jackson

J Math Biol· December 2025

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Correction: An efficient and flexible framework for inferring global sensitivity of agent-based model parameters.
Daniel R Bergman, Trachette Jackson, Harsh Vardhan Jain, Kerri-Ann Norton

PLoS Comput Biol· October 2025

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An efficient and flexible framework for inferring global sensitivity of agent-based model parameters.
Daniel R Bergman, Trachette Jackson, Harsh Vardhan Jain, Kerri-Ann Norton

PLoS Comput Biol· September 2025

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Evaluating PSA dynamics for predicting androgen deprivation failure with a patient specific prostate cancer model.
Shengchao Zhao, Evan T Keller, Tyler Robinson, Jinlu Dai, Alyssa Ghose, Trachette Jackson

NPJ Syst Biol Appl· June 2025

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Advances in Surrogate Modeling for Biological Agent-Based Simulations: Trends, Challenges, and Future Prospects.
Kerri-Ann Norton, Daniel Bergman, Harsh Vardhan Jain, Trachette Jackson

ArXiv· April 2025

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Mathematical modeling insights into improving CAR T cell therapy for solid tumors with bystander effects.
Erdi Kara, Trachette L Jackson, Chartese Jones, Rockford Sison, Reginald L McGee Ii

NPJ Syst Biol Appl· September 2024

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SMoRe GloS: An efficient and flexible framework for inferring global sensitivity of agent-based model parameters.
Daniel R Bergman, Trachette Jackson, Harsh Vardhan Jain, Kerri-Ann Norton

bioRxiv· September 2024

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Agent-Based Modeling of Virtual Tumors Reveals the Critical Influence of Microenvironmental Complexity on Immunotherapy Efficacy.
Yixuan Wang, Daniel R Bergman, Erica Trujillo, Anthony A Fernald, Lie Li, Trachette L Jackson

Cancers (Basel)· August 2024

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Dysregulated FGFR3 signaling alters the immune landscape in bladder cancer and presents therapeutic possibilities in an agent-based model.
Daniel R Bergman, Yixuan Wang, Erica Trujillo, Anthony A Fernald, Lie Li, Trachette L Jackson

Front Immunol· March 2024

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Mathematical model predicts tumor control patterns induced by fast and slow cytotoxic T lymphocyte killing mechanisms.
Yixuan Wang, Daniel R Bergman, Erica Trujillo, Alexander T Pearson, Randy F Sweis, Trachette L Jackson

Sci Rep· December 2023

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Connecting Agent-Based Models with High-Dimensional Parameter Spaces to Multidimensional Data Using SMoRe ParS: A Surrogate Modeling Approach.
Daniel R Bergman, Kerri-Ann Norton, Harsh Vardhan Jain, Trachette Jackson

Bull Math Biol· December 2023

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Phenotype switching in a global method for agent-based models of biological tissue.
Daniel Bergman, Trachette L Jackson

PLoS One· February 2023

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Analysis of HIV latent infection model with multiple infection stages and different drug classes.
Areej Alshorman, Nidal Al-Hosainat, Trachette Jackson

J Biol Dyn· December 2022

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Implementing a global approach for efficiently simulating molecular dynamics in agent-based models of biological tissue.
Daniel Bergman, Trachette L Jackson

STAR Protoc· December 2022

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SMoRe ParS: A novel methodology for bridging modeling modalities and experimental data applied to 3D vascular tumor growth.
Harsh Vardhan Jain, Kerri-Ann Norton, Bernardo Bianco Prado, Trachette L Jackson

Front Mol Biosci· December 2022

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Understanding the mechanisms of HPV-related carcinogenesis: Implications for cell cycle dynamics.
Derrick T Sund, Andrew F Brouwer, Heather M Walline, Thomas E Carey, Rafael Meza, Trachette Jackson

J Theor Biol· November 2022

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Tumor growth towards lower extracellular matrix conductivity regions under Darcy's Law and steady morphology.
Xiaoming Zheng, Kun Zhao, Trachette Jackson, John Lowengrub

J Math Biol· July 2022

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A global method for fast simulations of molecular dynamics in multiscale agent-based models of biological tissues.
Daniel Bergman, Randy F Sweis, Alexander T Pearson, Fereshteh Nazari, Trachette L Jackson

iScience· June 2022

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An Agent-Based Model of Combination Oncolytic Viral Therapy and Anti-PD-1 Immunotherapy Reveals the Importance of Spatial Location When Treating Glioblastoma.
Kathleen M Storey, Trachette L Jackson

Cancers (Basel)· October 2021

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A validated mathematical model of FGFR3-mediated tumor growth reveals pathways to harness the benefits of combination targeted therapy and immunotherapy in bladder cancer.
Kamaldeen Okuneye, Daniel Bergman, Jeffrey C Bloodworth, Alexander T Pearson, Randy F Sweis, Trachette L Jackson

Comput Syst Oncol· June 2021

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Standing Variations Modeling Captures Inter-Individual Heterogeneity in a Deterministic Model of Prostate Cancer Response to Combination Therapy.
Harsh Vardhan Jain, Inmaculada C Sorribes, Samuel K Handelman, Johnna Barnaby, Trachette L Jackson

Cancers (Basel)· April 2021

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Models Accurately Predict Response for IL6 Blockade in Head and Neck Cancer.
Fereshteh Nazari, Alexandra E Oklejas, Jacques E Nör, Alexander T Pearson, Trachette L Jackson

Cancer Res· April 2020

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Modeling Oncolytic Viral Therapy, Immune Checkpoint Inhibition, and the Complex Dynamics of Innate and Adaptive Immunity in Glioblastoma Treatment.
Kathleen M Storey, Sean E Lawler, Trachette L Jackson

Front Physiol· March 2020

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Mechanistic Deconvolution of Oral Absorption Model with Dynamic Gastrointestinal Fluid to Predict Regional Rate and Extent of GI Drug Dissolution.
Alex Yu, Mark J Koenigsknecht, Bart Hens, Jason R Baker, Bo Wen, Trachette L Jackson

AAPS J· November 2019

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A mathematical model for IL-6-mediated, stem cell driven tumor growth and targeted treatment.
Fereshteh Nazari, Alexander T Pearson, Jacques Eduardo Nör, Trachette L Jackson

PLoS Comput Biol· January 2018

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