Publications by authors named "Trevor Clancy"

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Deep learning of antibody epitopes using positional permutation vectors.
Ioannis Vardaxis, Boris Simovski, Irantzu Anzar, Richard Stratford, Trevor Clancy

Comput Struct Biotechnol J· December 2024

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Pan-cancer profiling of tumor-infiltrating natural killer cells through transcriptional reference mapping.
Herman Netskar, Aline Pfefferle, Jodie P Goodridge, Ebba Sohlberg, Olli Dufva, Trevor Clancy

Nat Immunol· August 2024

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Candidate tumor-specific CD8 T cell subsets identified in the malignant pleural effusion of advanced lung cancer patients by single-cell analysis.
Yusuke Sugita, Daisuke Muraoka, Ayako Demachi-Okamura, Hiroyasu Komuro, Katsuhiro Masago, Trevor Clancy

Oncoimmunology· July 2024

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People who use drugs show no increase in pre-existing T-cell cross-reactivity toward SARS-CoV-2 but develop a normal polyfunctional T-cell response after standard mRNA vaccination.
Murat Gainullin, Lorenzo Federico, Julie Røkke Osen, Viktoriia Chaban, Hassen Kared, Trevor Clancy

Front Immunol· February 2024

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Corrigendum: Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence.
Lorenzo Federico, Brandon Malone, Simen Tennøe, Viktoriia Chaban, Julie Røkke Osen, Trevor Clancy

Front Immunol· February 2024

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LTX-315 and adoptive cell therapy using tumor-infiltrating lymphocytes generate tumor specific T cells in patients with metastatic soft tissue sarcoma.
Morten Nielsen, Tine Monberg, Vibeke Sundvold, Benedetta Albieri, Dorrit Hovgaard, Trevor Clancy

Oncoimmunology· January 2024

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Integrative HLA typing of tumor and adjacent normal tissue can reveal insights into the tumor immune response.
Angelina Sverchkova, Scott Burkholz, Reid Rubsamen, Richard Stratford, Trevor Clancy

BMC Med Genomics· January 2024

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Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence.
Lorenzo Federico, Brandon Malone, Simen Tennøe, Viktoriia Chaban, Julie Røkke Osen, Trevor Clancy

Front Immunol· December 2023

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The interplay between neoantigens and immune cells in sarcomas treated with checkpoint inhibition.
Irantzu Anzar, Brandon Malone, Pubudu Samarakoon, Ioannis Vardaxis, Boris Simovski, Trevor Clancy

Front Immunol· October 2023

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Clinical Activity of Combined Telomerase Vaccination and Pembrolizumab in Advanced Melanoma: Results from a Phase I Trial.
Espen B Ellingsen, Steven O'Day, Artur Mezheyeuski, Agnieszka Gromadka, Trevor Clancy

Clin Cancer Res· August 2023

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Robust spike-specific CD4 and CD8 T cell responses in SARS-CoV-2 vaccinated hematopoietic cell transplantation recipients: a prospective, cohort study.
Lorenzo Federico, Tor Henrik Anderson Tvedt, Murat Gainullin, Julie Røkke Osen, Viktoriia Chaban, Trevor Clancy

Front Immunol· August 2023

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Single-cell sequencing on CD8 TILs revealed the nature of exhausted T cells recognizing neoantigen and cancer/testis antigen in non-small cell lung cancer.
Hiroyasu Komuro, Shuichi Shinohara, Yasunori Fukushima, Ayako Demachi-Okamura, Daisuke Muraoka, Trevor Clancy

J Immunother Cancer· August 2023

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Binding peptide generation for MHC Class I proteins with deep reinforcement learning.
Ziqi Chen, Baoyi Zhang, Hongyu Guo, Prashant Emani, Trevor Clancy

Bioinformatics· February 2023

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Characterization of the T cell receptor repertoire and melanoma tumor microenvironment upon combined treatment with ipilimumab and hTERT vaccination.
Espen Basmo Ellingsen, Gergana Bounova, Iliana Kerzeli, Irantzu Anzar, Donjete Simnica, Trevor Clancy

J Transl Med· September 2022

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The T Cell Epitope Landscape of SARS-CoV-2 Variants of Concern.
Simen Tennøe, Marius Gheorghe, Richard Stratford, Trevor Clancy

Vaccines (Basel)· July 2022

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Personalized HLA typing leads to the discovery of novel HLA alleles and tumor-specific HLA variants.
Irantzu Anzar, Angelina Sverchkova, Pubudu Samarakoon, Espen Basmo Ellingsen, Gustav Gaudernack, Trevor Clancy

HLA· April 2022

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Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs.
Brandon Malone, Boris Simovski, Clément Moliné, Jun Cheng, Marius Gheorghe, Trevor Clancy

Sci Rep· December 2020

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Improved HLA typing of Class I and Class II alleles from next-generation sequencing data.
Angelina Sverchkova, Irantzu Anzar, Richard Stratford, Trevor Clancy

HLA· December 2019

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Intra-lineage Plasticity and Functional Reprogramming Maintain Natural Killer Cell Repertoire Diversity.
Aline Pfefferle, Benedikt Jacobs, Herman Netskar, Eivind Heggernes Ask, Susanne Lorenz, Trevor Clancy

Cell Rep· November 2019

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NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer.
Irantzu Anzar, Angelina Sverchkova, Richard Stratford, Trevor Clancy

BMC Med Genomics· May 2019

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Bioinformatics Approaches to Profile the Tumor Microenvironment for Immunotherapeutic Discovery.
Trevor Clancy, Ruth Dannenfelser, Olga Troyanskaya, Karl Johan Malmberg, Eivind Hovig

Curr Pharm Des· March 2019

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Remodeling of secretory lysosomes during education tunes functional potential in NK cells.
Jodie P Goodridge, Benedikt Jacobs, Michelle L Saetersmoen, Dennis Clement, Quirin Hammer, Trevor Clancy

Nat Commun· January 2019

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Characterization of the Small Intestinal Lesion in Celiac Disease by Label-Free Quantitative Mass Spectrometry.
Astrid E V Tutturen, Siri Dørum, Trevor Clancy, Henrik M Reims, Asbjørn Christophersen

Am J Pathol· July 2018

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Complete Remission with Reduction of High-Risk Clones following Haploidentical NK-Cell Therapy against MDS and AML.
Andreas T Björklund, Mattias Carlsten, Ebba Sohlberg, Lisa L Liu, Trevor Clancy

Clin Cancer Res· April 2018

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Hypoxia-independent gene expression signature associated with radiosensitisation of prostate cancer cell lines by histone deacetylase inhibition.
Marte Jonsson, Harald Bull Ragnum, Cathinka Halle Julin, Andree Yeramian, Trevor Clancy

Br J Cancer· October 2016

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