Publications by authors named "Tristan Bepler"

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Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS.
Robert Kiewisz, Gunar Fabig, Will Conway, Jake Johnston, Victor A Kostyuchenko, Tristan Bepler

bioRxiv· May 2025

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Ghostbuster: A phase retrieval diffraction tomography algorithm for cryo-EM.
Joel Yeo, Benedikt J Daurer, Dari Kimanius, Deepan Balakrishnan, Tristan Bepler

Ultramicroscopy· August 2024

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Vertebrate centromeres in mitosis are functionally bipartite structures stabilized by cohesin.
Carlos Sacristan, Kumiko Samejima, Lorena Andrade Ruiz, Moonmoon Deb, Maaike L A Lambers, Tristan Bepler

Cell· June 2024

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Antiviral activity of the host defense peptide piscidin 1: investigating a membrane-mediated mode of action.
Tristan Bepler, Michael D Barrera, Mary T Rooney, Yawei Xiong, Huihui Kuang

Front Chem· June 2024

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Machine learning optimization of candidate antibody yields highly diverse sub-nanomolar affinity antibody libraries.
Lin Li, Esther Gupta, John Spaeth, Leslie Shing, Rafael Jaimes, Tristan Bepler

Nat Commun· June 2023

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Fully automated multi-grid cryoEM screening using Smart Leginon.
Anchi Cheng, Paul T Kim, Huihui Kuang, Joshua H Mendez, Eugene Y D Chua, Tristan Bepler

IUCrJ· January 2023

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Learning to automate cryo-electron microscopy data collection with Ptolemy.
Paul T Kim, Alex J Noble, Anchi Cheng, Tristan Bepler

IUCrJ· January 2023

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Smart data collection for CryoEM.
Tristan Bepler, Andrew J Borst, Jonathan Bouvette, Giuseppe Cannone, Songye Chen

J Struct Biol· December 2022

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Synthetic molecular evolution of antimicrobial peptides.
Charles H Chen, Tristan Bepler, Karen Pepper, Debbie Fu, Timothy K Lu

Curr Opin Biotechnol· June 2022

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An engineered protein-phosphorylation toggle network with implications for endogenous network discovery.
Deepak Mishra, Tristan Bepler, Brian Teague, Bonnie Berger, Jim Broach

Science· July 2021

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Learning the protein language: Evolution, structure, and function.
Tristan Bepler, Bonnie Berger

Cell Syst· June 2021

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CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks.
Ellen D Zhong, Tristan Bepler, Bonnie Berger, Joseph H Davis

Nat Methods· February 2021

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Topaz-Denoise: general deep denoising models for cryoEM and cryoET.
Tristan Bepler, Kotaro Kelley, Alex J Noble, Bonnie Berger

Nat Commun· October 2020

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Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.
Tristan Bepler, Andrew Morin, Micah Rapp, Julia Brasch, Lawrence Shapiro

Nat Methods· November 2019

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Visualization of clustered protocadherin neuronal self-recognition complexes.
Julia Brasch, Kerry M Goodman, Alex J Noble, Micah Rapp, Seetha Mannepalli, Tristan Bepler

Nature· May 2019

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Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.
Ning Shen, Jingkang Zhao, Joshua L Schipper, Yuning Zhang, Tristan Bepler

Cell Syst· April 2018

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Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.
Tristan Bepler, Andrew Morin, Alex J Noble, Julia Brasch, Lawrence Shapiro

Res Comput Mol Biol· April 2018

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Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler

Curr Biol· March 2015

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