Publications by authors named "Tytus D Mak"

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Comparative metabolomic analysis of human lung slices (hu-PCLS) exposed to either standard or FLASH protons: a pilot study.
Anastasia Velalopoulou, Tytus D Mak, Annabella Deziel, Michele M Kim, Constantinos Koumenis

Radiat Oncol· September 2025

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MassSpecGym: A benchmark for the discovery and identification of molecules.
Roman Bushuiev, Anton Bushuiev, Niek F de Jonge, Adamo Young, Fleming Kretschmer, Tytus D Mak

ArXiv· February 2025

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NIST Mass Spectral Libraries in the Context of the Circular Economy of Plastics.
Yamil Simón-Manso, Edward P Erisman, Tytus D Mak, Meghan C Burke, Adam Zuber

J Am Soc Mass Spectrom· February 2025

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New Library-Based Methods for Nontargeted Compound Identification by GC-EI-MS.
Deborah F McGlynn, Lindsay D Yee, H Martin Garraffo, Lewis Y Geer, Tytus D Mak

J Am Soc Mass Spectrom· February 2025

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The Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF.
Joshua Klein, Henry Lam, Tytus D Mak, Wout Bittremieux, Yasset Perez-Riverol

Anal Chem· November 2024

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Comparison of N-Glycopeptide to Released N-Glycan Abundances and the Influence of Glycopeptide Mass and Charge States on N-Linked Glycosylation of IgG Antibodies.
Concepcion A Remoroza, Meghan C Burke, Tytus D Mak, Sergey L Sheetlin, Yuri A Mirokhin

J Proteome Res· April 2024

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AIomics: Exploring More of the Proteome Using Mass Spectral Libraries Extended by Artificial Intelligence.
Lewis Y Geer, Joel Lapin, Douglas J Slotta, Tytus D Mak, Stephen E Stein

J Proteome Res· July 2023

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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Eric W Deutsch, Juan Antonio Vizcaíno, Andrew R Jones, Pierre-Alain Binz, Henry Lam, Tytus D Mak

J Proteome Res· February 2023

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Gut microbe-targeted choline trimethylamine lyase inhibition improves obesity via rewiring of host circadian rhythms.
Rebecca C Schugar, Christy M Gliniak, Lucas J Osborn, William Massey, Naseer Sangwan, Tytus D Mak

Elife· January 2022

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A Single Human-Relevant Fast Food Meal Rapidly Reorganizes Metabolomic and Transcriptomic Signatures in a Gut Microbiota-Dependent Manner.
Lucas J Osborn, Danny Orabi, Maryam Goudzari, Naseer Sangwan, Rakhee Banerjee, Tytus D Mak

Immunometabolism· September 2021

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Universal Spectrum Identifier for mass spectra.
Eric W Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Tytus D Mak

Nat Methods· July 2021

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Increasing the Coverage of a Mass Spectral Library of Milk Oligosaccharides Using a Hybrid-Search-Based Bootstrapping Method and Milks from a Wide Variety of Mammals.
Concepcion Africano Remoroza, Yuxue Liang, Tytus D Mak, Yuri Mirokhin, Sergey L Sheetlin

Anal Chem· August 2020

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Disparate Metabolomics Data Reassembler: A Novel Algorithm for Agglomerating Incongruent LC-MS Metabolomics Datasets.
Tytus D Mak, Maryam Goudarzi, Evagelia C Laiakis, Stephen E Stein

Anal Chem· April 2020

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The ABRF Metabolomics Research Group 2016 Exploratory Study: Investigation of Data Analysis Methods for Untargeted Metabolomics.
Christoph W Turck, Tytus D Mak, Maryam Goudarzi, Reza M Salek, Amrita K Cheema

Metabolites· March 2020

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Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk.
Connie A Remoroza, Tytus D Mak, Maria Lorna A De Leoz, Yuri A Mirokhin, Stephen E Stein

Anal Chem· August 2018

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Global metabolomic responses in urine from atm deficient mice in response to LD gamma irradiation doses.
Evagelia C Laiakis, Tytus D Mak, Steven J Strawn, Yi-Wen Wang, Bo-Hyun Moon

Environ Mol Mutagen· August 2018

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A Serum Small Molecule Biosignature of Radiation Exposure from Total Body Irradiated Patients.
Evagelia C Laiakis, Evan L Pannkuk, Siddheshwar Kisan Chauthe, Yi-Wen Wang, Ming Lian, Tytus D Mak

J Proteome Res· October 2017

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An Integrated Multi-Omic Approach to Assess Radiation Injury on the Host-Microbiome Axis.
Maryam Goudarzi, Tytus D Mak, Jonathan P Jacobs, Bo-Hyun Moon, Steven J Strawn

Radiat Res· September 2016

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Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease.
Robert A Quinn, Yan Wei Lim, Tytus D Mak, Katrine Whiteson, Mike Furlan

PeerJ· September 2016

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Implications of genotypic differences in the generation of a urinary metabolomics radiation signature.
Evagelia C Laiakis, Evan L Pannkuk, Maria Elena Diaz-Rubio, Yi-Wen Wang, Tytus D Mak

Mutat Res· June 2016

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A Lipidomic and Metabolomic Serum Signature from Nonhuman Primates Exposed to Ionizing Radiation.
Evan L Pannkuk, Evagelia C Laiakis, Tytus D Mak, Giuseppe Astarita, Simon Authier

Metabolomics· May 2016

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Exposure to ionizing radiation reveals global dose- and time-dependent changes in the urinary metabolome of rat.
Tytus D Mak, John B Tyburski, Kristopher W Krausz, John F Kalinich, Frank J Gonzalez

Metabolomics· October 2015

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Serum Dyslipidemia Is Induced by Internal Exposure to Strontium-90 in Mice, Lipidomic Profiling Using a Data-Independent Liquid Chromatography-Mass Spectrometry Approach.
Maryam Goudarzi, Waylon M Weber, Juijung Chung, Melanie Doyle-Eisele, Dunstana R Melo, Tytus D Mak

J Proteome Res· September 2015

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A Comprehensive Metabolomic Investigation in Urine of Mice Exposed to Strontium-90.
Maryam Goudarzi, Waylon M Weber, Tytus D Mak, Juijung Chung, Melanie Doyle-Eisele

Radiat Res· June 2015

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Selective paired ion contrast analysis: a novel algorithm for analyzing postprocessed LC-MS metabolomics data possessing high experimental noise.
Tytus D Mak, Evagelia C Laiakis, Maryam Goudarzi, Albert J Fornace

Anal Chem· March 2015

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