Publications by authors named "Udo Birk"

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Modulated illumination microscopy: Application perspectives in nuclear nanostructure analysis.
Christoph Cremer, Florian Schock, Antonio Virgilio Failla, Udo Birk

J Microsc· November 2024

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Spatially modulated illumination microscopy: application perspectives in nuclear nanostructure analysis.
Christoph Cremer, Udo Birk

Philos Trans A Math Phys Eng Sci· April 2022

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Super-Resolution Microscopy of Chromatin.
Udo J Birk

Genes (Basel)· June 2019

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Nanoscale distribution of TLR4 on primary human macrophages stimulated with LPS and ATI.
Jan Neumann, Kira Ziegler, Márton Gelléri, Janine Fröhlich-Nowoisky, Fobang Liu, Udo Birk

Nanoscale· May 2019

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Super-resolution binding activated localization microscopy through reversible change of DNA conformation.
Aleksander Szczurek, Udo Birk, Hans Knecht, Jurek Dobrucki, Sabine Mai

Nucleus· January 2018

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Super-resolution microscopy approaches to nuclear nanostructure imaging.
Christoph Cremer, Aleksander Szczurek, Florian Schock, Amine Gourram, Udo Birk

Methods· July 2017

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Super-resolution microscopy with very large working distance by means of distributed aperture illumination.
Udo Birk, Johann V Hase, Christoph Cremer

Sci Rep· June 2017

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Imaging chromatin nanostructure with binding-activated localization microscopy based on DNA structure fluctuations.
Aleksander Szczurek, Ludger Klewes, Jun Xing, Amine Gourram, Udo Birk

Nucleic Acids Res· May 2017

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Single Molecule Localization Microscopy of Mammalian Cell Nuclei on the Nanoscale.
Aleksander Szczurek, Jun Xing, Udo J Birk, Christoph Cremer

Front Genet· July 2016

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Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe.
Dominika Żurek-Biesiada, Aleksander T Szczurek, Kirti Prakash, Gerrit Best, Giriram K Mohana, Udo Birk

Data Brief· June 2016

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Localization microscopy of DNA in situ using Vybrant(®) DyeCycle™ Violet fluorescent probe: A new approach to study nuclear nanostructure at single molecule resolution.
Dominika Żurek-Biesiada, Aleksander T Szczurek, Kirti Prakash, Giriram K Mohana, Hyun-Keun Lee, Udo J Birk

Exp Cell Res· May 2016

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Single-Molecule Localization Microscopy allows for the analysis of cancer metastasis-specific miRNA distribution on the nanoscale.
Olga Oleksiuk, Mohammed Abba, Kerem Can Tezcan, Wladimir Schaufler, Felix Bestvater, Udo Birk

Oncotarget· December 2015

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A transient ischemic environment induces reversible compaction of chromatin.
Ina Kirmes, Aleksander Szczurek, Kirti Prakash, Iryna Charapitsa, Christina Heiser, Udo Birk

Genome Biol· November 2015

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Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes.
Kirti Prakash, David Fournier, Stefan Redl, Gerrit Best, Máté Borsos, Udo J Birk

Proc Natl Acad Sci U S A· November 2015

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Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes.
Aleksander T Szczurek, Kirti Prakash, Hyun-Keun Lee, Dominika J Zurek-Biesiada, Gerrit Best, Udo Birk

Nucleus· September 2015

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Automated motion correction for in vivo optical projection tomography.
Shouping Zhu, Di Dong, Udo Jochen Birk, Matthias Rieckher, Nektarios Tavernarakis

IEEE Trans Med Imaging· July 2012

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Microscopic optical projection tomography in vivo.
Matthias Rieckher, Udo Jochen Birk, Heiko Meyer, Jorge Ripoll, Nektarios Tavernarakis

PLoS One· April 2011

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Improved reconstructions and generalized filtered back projection for optical projection tomography.
Udo Jochen Birk, Alex Darrell, Nikos Konstantinides, Ana Sarasa-Renedo, Jorge Ripoll

Appl Opt· February 2011

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Nanosizing by spatially modulated illumination (SMI) microscopy and applications to the nucleus.
Udo J Birk, David Baddeley, Christoph Cremer

Methods Mol Biol· September 2010

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Correction for specimen movement and rotation errors for in-vivo Optical Projection Tomography.
Udo Jochen Birk, Matthias Rieckher, Nikos Konstantinides, Alex Darrell, Ana Sarasa-Renedo

Biomed Opt Express· July 2010

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Source intensity profile in noncontact optical tomography.
Ana Sarasa-Renedo, Rosy Favicchio, Udo Birk, Giannis Zacharakis, Clio Mamalaki

Opt Lett· January 2010

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Festschrift to recognise and celebrate Christoph Cremer's contribution to the field of biophysics on the occasion of his 65th birthday. Preface.
Udo Jochen Birk, Michael Hausmann

Eur Biophys J· July 2009

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High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy.
Jürgen Reymann, David Baddeley, Manuel Gunkel, Paul Lemmer, Werner Stadter, Udo Birk

Chromosome Res· August 2008

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Nanostructure analysis using spatially modulated illumination microscopy.
David Baddeley, Claudia Batram, Yanina Weiland, Christoph Cremer, Udo J Birk

Nat Protoc· January 2008

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