Publications by authors named "Umberto Perron"

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Integrative ensemble modelling of cetuximab sensitivity in colorectal cancer patient-derived xenografts.
Umberto Perron, Elena Grassi, Aikaterini Chatzipli, Marco Viviani, Emre Karakoc

Nat Commun· November 2024

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A heuristic algorithm solving the mutual-exclusivity-sorting problem.
Alessandro Vinceti, Lucia Trastulla, Umberto Perron, Andrea Raiconi, Francesco Iorio

Bioinformatics· January 2023

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An interactive web application for processing, correcting, and visualizing genome-wide pooled CRISPR-Cas9 screens.
Alessandro Vinceti, Riccardo Roberto De Lucia, Paolo Cremaschi, Umberto Perron, Emre Karakoc

Cell Rep Methods· January 2023

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Reduced gene templates for supervised analysis of scale-limited CRISPR-Cas9 fitness screens.
Alessandro Vinceti, Umberto Perron, Lucia Trastulla, Francesco Iorio

Cell Rep· July 2022

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CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens.
Alessandro Vinceti, Emre Karakoc, Clare Pacini, Umberto Perron, Riccardo Roberto De Lucia

BMC Genomics· November 2021

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Ambiguity Coding Allows Accurate Inference of Evolutionary Parameters from Alignments in an Aggregated State-Space.
Claudia C Weber, Umberto Perron, Dearbhaile Casey, Ziheng Yang, Nick Goldman

Syst Biol· January 2021

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Redefining false discoveries in cancer data analyses.
Hanna Najgebauer, Umberto Perron, Francesco Iorio

Nat Comput Sci· January 2021

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Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.
Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele

PLoS Comput Biol· January 2021

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Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States.
Umberto Perron, Alexey M Kozlov, Alexandros Stamatakis, Nick Goldman, Iain H Moal

Mol Biol Evol· September 2019

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In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression.
Umberto Perron, Paolo Provero, Ivan Molineris

BMC Bioinformatics· March 2017

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