Publications by authors named "Van-The Le"

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CFTR_TL: Transfer Learning-Enhanced Prediction of CFTR ATP Binding Sites with Multi-Window Convolutional Neural Networks.
Yu-Cheng Lee, Yan-Yun Chang, Wei-En Jhang, Van The Le, Sin-Siang Wei

ACS Omega· December 2025

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IFNg_DeepKG: A Novel Model for Identifying Interferon-Gamma-Inducing Epitopes Using Knowledge Graph RAG in Biomedical Applications.
Van The Le, Juan Peter Timothy Yuune, Yu-Yen Ou

J Chem Inf Model· December 2025

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NA_mCNN: Classification of Sodium Transporters in Membrane Proteins by Integrating Multi-Window Deep Learning and ProtTrans for Their Therapeutic Potential.
Muhammad Shahid Malik, Van The Le, Yu-Yen Ou

J Proteome Res· May 2025

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DeepCR: predicting cytokine receptor proteins through pretrained language models and deep learning networks.
Van The Le, Juan Peter Timothy Yuune, Thi Thu Phuong Vu, Muhammad Shahid Malik, Yu-Yen Ou

J Biomol Struct Dyn· May 2025

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NAD_MCNN: Combining Protein Language Models and Multiwindow Convolutional Neural Networks for Deacetylase NAD+ Binding Site Prediction.
Van-The Le, Yu-Chen Liu, Yan-Yun Chang, Yu-Cheng Lee, Yi-Jing Lin

Chem Biol Drug Des· April 2025

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ATP_mCNN: Predicting ATP binding sites through pretrained language models and multi-window neural networks.
Van-The Le, Muhammad-Shahid Malik, Yi-Jing Lin, Yu-Chen Liu, Yan-Yun Chang

Comput Biol Med· February 2025

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MCNN_MC: Computational Prediction of Mitochondrial Carriers and Investigation of Bongkrekic Acid Toxicity Using Protein Language Models and Convolutional Neural Networks.
Muhammad Shahid Malik, Yan-Yun Chang, Yu-Chen Liu, Van The Le, Yu-Yen Ou

J Chem Inf Model· December 2024

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MCNN-AAPT: accurate classification and functional prediction of amino acid and peptide transporters in secondary active transporters using protein language models and multi-window deep learning.
Muhammad Shahid Malik, Van The Le, Syed Muazzam Ali Shah, Yu-Yen Ou

J Biomol Struct Dyn· November 2024

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VesiMCNN: Using pre-trained protein language models and multiple window scanning convolutional neural networks to identify vesicular transport proteins.
Van The Le, Yi-Hsuan Tseng, Yu-Chen Liu, Muhammad Shahid Malik, Yu-Yen Ou

Int J Biol Macromol· September 2024

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ProtTrans and multi-window scanning convolutional neural networks for the prediction of protein-peptide interaction sites.
Van-The Le, Zi-Jun Zhan, Thi-Thu-Phuong Vu, Muhammad-Shahid Malik, Yu-Yen Ou

J Mol Graph Model· July 2024

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DeepPLM_mCNN: An approach for enhancing ion channel and ion transporter recognition by multi-window CNN based on features from pre-trained language models.
Van-The Le, Muhammad-Shahid Malik, Yi-Hsuan Tseng, Yu-Cheng Lee, Cheng-I Huang

Comput Biol Chem· June 2024

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